View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_12 (Length: 570)

Name: NF16177_low_12
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_12
NF16177_low_12
[»] chr4 (4 HSPs)
chr4 (191-555)||(33293745-33294109)
chr4 (9-178)||(33294530-33294695)
chr4 (14-119)||(50398687-50398792)
chr4 (14-118)||(4127588-4127692)
[»] chr3 (4 HSPs)
chr3 (14-119)||(39653506-39653611)
chr3 (14-105)||(16811267-16811358)
chr3 (28-73)||(41472225-41472270)
chr3 (14-46)||(41473883-41473915)
[»] chr2 (3 HSPs)
chr2 (14-119)||(38899067-38899172)
chr2 (14-119)||(33174844-33174949)
chr2 (11-59)||(16379275-16379323)
[»] chr6 (2 HSPs)
chr6 (19-119)||(6331067-6331167)
chr6 (15-61)||(2891050-2891096)
[»] chr1 (10 HSPs)
chr1 (15-61)||(7547980-7548026)
chr1 (14-119)||(20054235-20054340)
chr1 (14-119)||(20054691-20054796)
chr1 (14-119)||(20055147-20055252)
chr1 (14-119)||(20055603-20055708)
chr1 (14-119)||(20056059-20056164)
chr1 (14-119)||(20056515-20056620)
chr1 (14-119)||(20056962-20057067)
chr1 (14-119)||(20057418-20057523)
chr1 (15-46)||(35759836-35759867)
[»] scaffold0333 (1 HSPs)
scaffold0333 (14-119)||(4902-5007)
[»] chr5 (3 HSPs)
chr5 (14-119)||(34371954-34372059)
chr5 (14-119)||(21886301-21886406)
chr5 (14-47)||(22556879-22556912)
[»] chr7 (4 HSPs)
chr7 (11-47)||(13124904-13124940)
chr7 (14-105)||(34405760-34405851)
chr7 (14-119)||(6747753-6747858)
chr7 (14-74)||(2189486-2189546)
[»] chr8 (2 HSPs)
chr8 (15-74)||(6465110-6465169)
chr8 (14-119)||(10844769-10844874)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 191 - 555
Target Start/End: Complemental strand, 33294109 - 33293745
Alignment:
Q  191 tcccctcccttaaaatccctcattttcaccacagtttgaaccgaacagacctttactagtatctttaattcatttgtttgacagacactacaattgaata 290  Q
    |||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33294109 tcccctccattaaaattcctcattttctccacagtttgaaccaaacagacctttactagtatctttaattcatttgtttgacagacactacaattgaata 33294010  T
Q  291 agcacttaagctgaagttgaacactactcattcttccttcatttcttatggttgatgcctttatcatatttaaacgtcgctaaatccaggacattctgta 390  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33294009 agcacttaagttgaagttgaacactactcattcttccttcatttcttatggttgatgcctttatcatatttaaacgtcgctaaatccaggacattctgta 33293910  T
Q  391 gctacaagctcattcacaagcatgcaccatttgctaccattgaaaatgcctcattatttaaccaaccttcttcaattttttcttcactattacgtgaatt 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33293909 gctacaagctcattcacaagcatgcaccatttgctaccattgaaaatgcctcattatttaaccaaccttcttcaattttttcttcactattacgtgaatt 33293810  T
Q  491 ctcaaatacccttatcgatgtcaaatccatccacgcacaaattatcagaaattatgcatcaaatc 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33293809 ctcaaatacccttatcgatgtcaaatccatccacgcacaaattatcagaaattatgcatcaaatc 33293745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 33294695 - 33294530
Alignment:
Q  9 gagatgaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtg 108  Q
    ||||||||||||||||||||||| || |||||||| ||  ||||||||||||| |||||||||| |||||||||        ||||||||||||||||||    
T  33294695 gagatgaaccaagcagaagttggcggacatgtaacacctgggactgacgagggcgatgagtggttgatggtgcac-------gacattgagcggctcgtg 33294603  T
Q  109 gcaacttctaggcaaatataatgataacggcat---aatgagagagatcatgaaccaaacatataaataatta 178  Q
    ||| ||||||||||||||||| |  ||||||||   ||||||||||||||||||| |||||||||||||||||    
T  33294602 gcagcttctaggcaaatataacggaaacggcatcagaatgagagagatcatgaactaaacatataaataatta 33294530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 50398792 - 50398687
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    |||| |||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || ||||||| ||||||||||  | ||||    
T  50398792 gaacgaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcatgacaatgagcggctcccgacaac 50398693  T
Q  114 ttctag 119  Q
    ||||||    
T  50398692 ttctag 50398687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 4127692 - 4127588
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| |||||| |||||||| |||| |||||||||||| |  |||||||||  ||||||  || || |||| ||||||||||  | ||||    
T  4127692 gaaccaagcggaagctggtggacatgtaacacccaagactgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcccgacaac 4127593  T
Q  114 ttcta 118  Q
    |||||    
T  4127592 ttcta 4127588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 39653506 - 39653611
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | ||||||||||||  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  39653506 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggtggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 39653605  T
Q  114 ttctag 119  Q
    ||||||    
T  39653606 ttctag 39653611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 16811267 - 16811358
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctc 105  Q
    ||||||||| |||| ||||||||||||||| |||| | ||||||||||||  |||||||||  ||||||  || || |||| ||||||||||    
T  16811267 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggtggggagtggtcgccggtgcacaaggcacgacaatgagcggctc 16811358  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 41472225 - 41472270
Alignment:
Q  28 ttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtc 73  Q
    ||||||||||||||||||||| | |||| ||||||| |||||||||    
T  41472225 ttggtgggcatgtaacgcccaaggctgaagagggtggtgagtggtc 41472270  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 41473883 - 41473915
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcc 46  Q
    ||||| |||||||||||||||||||||||||||    
T  41473883 gaacccagcagaagttggtgggcatgtaacgcc 41473915  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 38899172 - 38899067
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| | || |||||||||||| |  ||||||||| |||||||  |||||||| | |||| |||||  | ||||    
T  38899172 gaaccaagcggaagctggtgggcatgtaacactcaagactgacgagggcggggagtggtcgttggtgcataagacatgaaaatgagtggctcccgacaac 38899073  T
Q  114 ttctag 119  Q
    ||||||    
T  38899072 ttctag 38899067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 33174844 - 33174949
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || ||||||| |||| |||||  | ||||    
T  33174844 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcatgacaatgagtggctcccgacaac 33174943  T
Q  114 ttctag 119  Q
    ||||||    
T  33174944 ttctag 33174949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 16379275 - 16379323
Alignment:
Q  11 gatgaaccaagcagaagttggtgggcatgtaacgcccaggactgacgag 59  Q
    |||||||||||| |||||||||||||||||||| |||| | ||||||||    
T  16379275 gatgaaccaagcggaagttggtgggcatgtaacacccacggctgacgag 16379323  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 6331167 - 6331067
Alignment:
Q  19 aagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaacttcta 118  Q
    |||| |||| ||||||||||||||| |||| | ||||||||||||  |||||||||  ||||||  || ||||||| ||||||||||  | |||||||||    
T  6331167 aagcggaagctggtgggcatgtaacacccaaggctgacgagggtggggagtggtcgccggtgcacaaggcatgacaatgagcggctcccgacaacttcta 6331068  T
Q  119 g 119  Q
    |    
T  6331067 g 6331067  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 2891096 - 2891050
Alignment:
Q  15 aaccaagcagaagttggtgggcatgtaacgcccaggactgacgaggg 61  Q
    |||||||| |||||||||||||||||||| |||| | ||||||||||    
T  2891096 aaccaagcggaagttggtgggcatgtaacacccaaggctgacgaggg 2891050  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 7547980 - 7548026
Alignment:
Q  15 aaccaagcagaagttggtgggcatgtaacgcccaggactgacgaggg 61  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  7547980 aaccaagcaaaagctggtgggcatgtaacacccaggactgacgaggg 7548026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 20054340 - 20054235
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  20054340 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 20054241  T
Q  114 ttctag 119  Q
    ||||||    
T  20054240 ttctag 20054235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 20054796 - 20054691
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  20054796 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 20054697  T
Q  114 ttctag 119  Q
    ||||||    
T  20054696 ttctag 20054691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 20055252 - 20055147
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  20055252 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 20055153  T
Q  114 ttctag 119  Q
    ||||||    
T  20055152 ttctag 20055147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 20055708 - 20055603
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  20055708 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 20055609  T
Q  114 ttctag 119  Q
    ||||||    
T  20055608 ttctag 20055603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 20056164 - 20056059
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  20056164 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 20056065  T
Q  114 ttctag 119  Q
    ||||||    
T  20056064 ttctag 20056059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 20056620 - 20056515
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  20056620 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 20056521  T
Q  114 ttctag 119  Q
    ||||||    
T  20056520 ttctag 20056515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 20057067 - 20056962
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  20057067 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 20056968  T
Q  114 ttctag 119  Q
    ||||||    
T  20056967 ttctag 20056962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 20057523 - 20057418
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  20057523 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 20057424  T
Q  114 ttctag 119  Q
    ||||||    
T  20057423 ttctag 20057418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 35759867 - 35759836
Alignment:
Q  15 aaccaagcagaagttggtgggcatgtaacgcc 46  Q
    ||||||||||||||||||||||||||||||||    
T  35759867 aaccaagcagaagttggtgggcatgtaacgcc 35759836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 4902 - 5007
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| || | | |||||||||| || |||||||||  ||||||  || || |||| | |||||||| || ||||    
T  4902 gaaccaagcggaagctggtgggcatgtaacacctaaggctgacgagggcgaggagtggtcgccggtgcacaaggcacgacaattagcggctcctgacaac 5001  T
Q  114 ttctag 119  Q
    ||||||    
T  5002 ttctag 5007  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 34371954 - 34372059
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  34371954 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcaggacaatgagcggctcctgacagc 34372053  T
Q  114 ttctag 119  Q
    ||||||    
T  34372054 ttctag 34372059  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 21886406 - 21886301
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    |||||||||||||| ||||||||||||||| || | | |||| ||||| |  |||||||||  ||||||  || || |||| |||||||||| ||| | |    
T  21886406 gaaccaagcagaagctggtgggcatgtaacaccgaaggctgatgagggcggagagtggtcgccggtgcacaaggcacgacaatgagcggctcctggtagc 21886307  T
Q  114 ttctag 119  Q
    ||||||    
T  21886306 ttctag 21886301  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 22556879 - 22556912
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgccc 47  Q
    |||||||||||||| |||||||||||||||||||    
T  22556879 gaaccaagcagaagctggtgggcatgtaacgccc 22556912  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 13124940 - 13124904
Alignment:
Q  11 gatgaaccaagcagaagttggtgggcatgtaacgccc 47  Q
    |||||||||||| ||||||||||||||||||||||||    
T  13124940 gatgaaccaagcggaagttggtgggcatgtaacgccc 13124904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 34405851 - 34405760
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctc 105  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| ||||||||||    
T  34405851 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctc 34405760  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 6747858 - 6747753
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    ||||||||  |||| ||||||||||||||| |||| | ||||||||||    |||||||||  ||||||  || ||||||| ||||||||||  | ||||    
T  6747858 gaaccaagtggaagctggtgggcatgtaacacccaaggctgacgagggcagggagtggtcgccggtgcacaaggcatgacaatgagcggctcccgacaac 6747759  T
Q  114 ttctag 119  Q
    ||||||    
T  6747758 ttctag 6747753  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 2189486 - 2189546
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcg 74  Q
    ||||||||| |||| ||||||||||||||| |||| | |||||||||| |  |||||||||    
T  2189486 gaaccaagcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcg 2189546  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 6465169 - 6465110
Alignment:
Q  15 aaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcg 74  Q
    |||||||  |||||||||||||||||||| |||| | |||||||||| || |||||||||    
T  6465169 aaccaagtggaagttggtgggcatgtaacacccacgtctgacgagggcgaggagtggtcg 6465110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 10844769 - 10844874
Alignment:
Q  14 gaaccaagcagaagttggtgggcatgtaacgcccaggactgacgagggtgatgagtggtcgatggtgcagcagacatgacattgagcggctcgtggcaac 113  Q
    |||||| || |||| ||||||||||||||| |||| | |||||||||| |  |||||||||  ||||||  || || |||| |||||||||| || || |    
T  10844769 gaaccatgcggaagctggtgggcatgtaacacccaaggctgacgagggcggggagtggtcgccggtgcacaaggcacgacaatgagcggctcctgacagc 10844868  T
Q  114 ttctag 119  Q
    ||||||    
T  10844869 ttctag 10844874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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