View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_123 (Length: 226)
Name: NF16177_low_123
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_123 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 51959033 - 51959219
Alignment:
| Q |
24 |
ctaaatatatggtaaatcttgatgcaagaaaggtgcagtggtctccaaaatggaaggacatagaccatatagtttttaaatgtggaacattcctaatgta |
123 |
Q |
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| T |
51959033 |
ctaaatatatggtaaatcttgatgcaagaaaggtgcagtggtctccaaaatggaaggacatagaccatatagtttttaaatgtggaacattcctaatgta |
51959132 |
T |
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| Q |
124 |
ctacaaccccccagttttggctttgaggcaactaggttatcctcacaggggagaacctgctaagaaagcattaactacttttgttat |
210 |
Q |
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| T |
51959133 |
ctacaaccccccagttttggctttgaggcaactaggtcatccttacaggggagaacctgctaagaaagcattaactacttttgttat |
51959219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 34704661 - 34704584
Alignment:
| Q |
133 |
cccagttttggctttgaggcaactaggttatcctcacaggggagaacctgctaagaaagcattaactacttttgttat |
210 |
Q |
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| T |
34704661 |
cccagttttggctttgaggcaactaggtcatcctcacaggggagaacctgctaaggaagcattaactacttttgttat |
34704584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 34704750 - 34704716
Alignment:
| Q |
24 |
ctaaatatatggtaaatcttgatgcaagaaaggtg |
58 |
Q |
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| T |
34704750 |
ctaaatatatggtaaatcttgatgcaggaaaggtg |
34704716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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