View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_14 (Length: 563)

Name: NF16177_low_14
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_14
NF16177_low_14
[»] chr5 (1 HSPs)
chr5 (1-546)||(11922903-11923449)
[»] chr6 (2 HSPs)
chr6 (104-258)||(14813542-14813696)
chr6 (80-239)||(5921150-5921309)
[»] chr4 (4 HSPs)
chr4 (104-258)||(5238084-5238238)
chr4 (104-258)||(10636866-10637020)
chr4 (65-260)||(22642041-22642236)
chr4 (104-232)||(35085942-35086070)
[»] chr1 (2 HSPs)
chr1 (104-258)||(2358474-2358628)
chr1 (381-497)||(12921019-12921134)
[»] chr7 (2 HSPs)
chr7 (104-247)||(14583565-14583708)
chr7 (104-245)||(15997464-15997605)
[»] chr3 (1 HSPs)
chr3 (102-189)||(17482145-17482232)


Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 11922903 - 11923449
Alignment:
Q  1 gcactttaggaagaattagcatgacacagacccattcctaatggctagtcttcatatttatcgatgtgaagccacgcgtgttgccaagatttacataact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11922903 gcactttaggaagaattagcatgacacagacccattcctaatggctagtcttcatctttatcgatgtgaagccacgcgtgttgccaagatttacataact 11923002  T
Q  101 aaagatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttccctgaacaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11923003 aaagatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttccctgaacaagg 11923102  T
Q  201 tttactcccttgttgtttaagaagaaagcaataactcttctattacttctatgagtgttttttatgatagcaatattcagctaaatgaatttgatgcaaa 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11923103 tttacttccttgttgtttaagaagaaagcaataactcttctattacttctataagtgttttttatgatagcaatattcagctaaatgaatttgatgcaaa 11923202  T
Q  301 aaggcctcgggttgtggtaaaggttcctttcatgccagtaata-aaaaacctagcagatttttcacttttttccatctcaataatcatactgttgacttt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11923203 aaggcctcgggttgtggtaaaggttcctttcatgccagtaatagaaaaacctagcagatttttcacttttttccatctcaataatcatactgtttacttt 11923302  T
Q  400 agttaccaaaagcatggctatcccaacgtcaataaacaacattttctgtgtaagtgttgtttctcaagaagattatgatgcaagaaattcatcaactctt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11923303 agttaccaaaagcatggctatcccaacgtcaataaacaacattttctgtgtaaatgttgtttctcaagaagattatgatgcaagaaattcatcaactctt 11923402  T
Q  500 ggcttgagcacctctaacagttccagcactagtttatctcaagaaca 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11923403 ggcttgagcacctctaacagttccagcactagtttatctcaagaaca 11923449  T

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Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 14813542 - 14813696
Alignment:
Q  104 gatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttccctgaacaaggttt 203  Q
    ||||| || ||||||||||| ||||| ||||||||||||||||||||  | | |||||||||| | || ||||||||| |||||||  ||||||| ||||    
T  14813542 gatcagattatgcaatttcttacaggattgaatgatcaattttctgttgttagaactcaagttcttctccttgatcctcttccttctatgaacaaagttt 14813641  T
Q  204 actcccttgttgtttaagaagaaagcaataactcttctattacttctatgagtgt 258  Q
    | ||  | |||||| | |||||||| ||| |  |||||||||||||| |||||||    
T  14813642 attctttagttgttcaggaagaaagtaatcatgcttctattacttctttgagtgt 14813696  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 239
Target Start/End: Complemental strand, 5921309 - 5921150
Alignment:
Q  80 gttgccaagatttacataactaaagatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatc 179  Q
    ||||| |||||||||| |||| | |||||||||||||| ||| |||| || ||||||||| | |||   ||  | || ||||||||| | ||||||||||    
T  5921309 gttgctaagatttacagaactgaggatcaaatcatgcagtttttgactggtttgaatgataattttggggttgttaagactcaagttcttcttcttgatc 5921210  T
Q  180 ctattccttccctgaacaaggtttactcccttgttgtttaagaagaaagcaataactctt 239  Q
    || ||||| | || || ||||||||||| ||||| ||  ||||||||| |||||| ||||    
T  5921209 ctcttcctccgctcaagaaggtttactctcttgtggtgcaagaagaaaacaataattctt 5921150  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 5238084 - 5238238
Alignment:
Q  104 gatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttccctgaacaaggttt 203  Q
    ||||| || ||||||||||| ||||| ||||||||||||||||||||  | | |||||||||| | || ||||||||| |||||||  ||||||| ||||    
T  5238084 gatcagattatgcaatttcttacaggattgaatgatcaattttctgttgttagaactcaagttcttctccttgatcctcttccttctatgaacaaagttt 5238183  T
Q  204 actcccttgttgtttaagaagaaagcaataactcttctattacttctatgagtgt 258  Q
    | ||  | |||||| | |||||||| ||| |  |||||||||||||| |||||||    
T  5238184 attctttagttgttcaggaagaaagtaatcatgcttctattacttctttgagtgt 5238238  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 10636866 - 10637020
Alignment:
Q  104 gatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttccctgaacaaggttt 203  Q
    ||||| || ||||||||||| ||||| |||||||| |||||||||||  | | |||||||||| | || ||||||||| |||||||  ||||||| ||||    
T  10636866 gatcagattatgcaatttcttacaggattgaatgaccaattttctgttgttagaactcaagttcttctccttgatcctcttccttctatgaacaaagttt 10636965  T
Q  204 actcccttgttgtttaagaagaaagcaataactcttctattacttctatgagtgt 258  Q
    | ||  | |||||| | |||||||| ||| |  |||||||||||||| |||||||    
T  10636966 attctttagttgttcaggaagaaagtaatcatgcttctattacttctttgagtgt 10637020  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 260
Target Start/End: Original strand, 22642041 - 22642236
Alignment:
Q  65 tgtgaagccacgcgtgttgccaagatttacataactaaagatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaag 164  Q
    |||||||| || ||||||||||||| | | | |||| | |||||||| ||||||||| | || ||||||||||||||||| |||||  |||| |||||      
T  22642041 tgtgaagctactcgtgttgccaagactcatagaactgaggatcaaataatgcaatttttaactggcttgaatgatcaattctctgtggtaaagactcaga 22642140  T
Q  165 ttttgcttcttgatcctattccttccctgaacaaggtttactcccttgttgtttaagaagaaagcaataactcttctattacttctatgagtgttt 260  Q
    || |  | ||||||||| | |||||  |||| |||||||| ||  | ||  || ||||||| |||||||| ||||| ||| ||||| |||||||||    
T  22642141 ttctattgcttgatcctctaccttctttgaataaggtttattctatggtgattcaagaagagagcaataattcttcaattccttctgtgagtgttt 22642236  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 232
Target Start/End: Original strand, 35085942 - 35086070
Alignment:
Q  104 gatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttccctgaacaaggttt 203  Q
    |||||||| ||||||||||| |||||||| || ||  | || || ||| ||||||||||  | || || ||||||||| ||||| | || || |||||||    
T  35085942 gatcaaattatgcaatttcttacaggcttaaacgaaaatttctcagtagtaaaaactcagatcttactacttgatcctcttcctactctaaataaggttt 35086041  T
Q  204 actcccttgttgtttaagaagaaagcaat 232  Q
    |||| |||||  || ||||||| ||||||    
T  35086042 actcacttgtaattcaagaagagagcaat 35086070  T

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Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 104 - 258
Target Start/End: Original strand, 2358474 - 2358628
Alignment:
Q  104 gatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttccctgaacaaggttt 203  Q
    ||||| || ||||||||||| ||||| ||||||||||||||||||||  | | |||||||||| | || ||||||||| |||||||  ||||||| ||||    
T  2358474 gatcagattatgcaatttcttacaggattgaatgatcaattttctgtggttagaactcaagttcttctccttgatcctcttccttctatgaacaaagttt 2358573  T
Q  204 actcccttgttgtttaagaagaaagcaataactcttctattacttctatgagtgt 258  Q
    | ||  | |||||| ||||||| || ||| |  |||||||||||||| |||||||    
T  2358574 attctttagttgttcaagaagagagtaatcatgcttctattacttctttgagtgt 2358628  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 497
Target Start/End: Complemental strand, 12921134 - 12921019
Alignment:
Q  381 taatcatactgttgactttagttaccaaaagcatggctatcccaacgtcaataaacaacattttctgtgtaagtgttgtttctcaagaagattatgatgc 480  Q
    ||||||||| ||||| ||| || ||||||||||| | || || ||| ||||||||||||| |  | |||||| || ||||||||||||||||| ||||||    
T  12921134 taatcataccgttgatttttgtcaccaaaagcattgttaccctaacatcaataaacaacagtcac-gtgtaaatgctgtttctcaagaagattctgatgc 12921036  T
Q  481 aagaaattcatcaactc 497  Q
    ||  |||||||| ||||    
T  12921035 aaacaattcatccactc 12921019  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 247
Target Start/End: Original strand, 14583565 - 14583708
Alignment:
Q  104 gatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttccctgaacaaggttt 203  Q
    ||||||||||||||||| || || ||||||||||||||||| || ||  | | |||||| ||| | ||| |||||||| ||||||| || ||||| ||||    
T  14583565 gatcaaatcatgcaattcctcactggcttgaatgatcaattctcagttgttagaactcaggttcttcttgttgatcctcttccttctctaaacaaagttt 14583664  T
Q  204 actcccttgttgtttaagaagaaagcaataactcttctattact 247  Q
    | ||  | |||||| ||||||| ||||| ||  |||||||||||    
T  14583665 attctttggttgttcaagaagagagcaacaatgcttctattact 14583708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 245
Target Start/End: Original strand, 15997464 - 15997605
Alignment:
Q  104 gatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttccctgaacaaggttt 203  Q
    |||||||||||||||||||| |  | ||||||||||||||| || ||  | | |||||| ||| | ||| |||||||| ||||||| |||||||| ||||    
T  15997464 gatcaaatcatgcaatttctcattgacttgaatgatcaattctcggttgttagaactcaggttcttcttgttgatcctcttccttctctgaacaaagttt 15997563  T
Q  204 actcccttgttgtttaagaagaaagcaataactcttctatta 245  Q
    | ||  | |||||| ||||||| ||||| ||  |||||||||    
T  15997564 attctttggttgttcaagaagagagcaacaatgcttctatta 15997605  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 17482232 - 17482145
Alignment:
Q  102 aagatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatcctattccttc 189  Q
    |||||||||||||||||||||| | |||| |||| || |||||||| ||  | || |||||| |||||||| | |||||| |||||||    
T  17482232 aagatcaaatcatgcaatttctcataggcctgaaagaccaattttcagtggtcaagactcaaattttgcttatggatcctcttccttc 17482145  T

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