View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_16 (Length: 554)

Name: NF16177_low_16
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_16
NF16177_low_16
[»] chr8 (2 HSPs)
chr8 (11-537)||(1286030-1286533)
chr8 (504-537)||(32258097-32258130)
[»] chr7 (1 HSPs)
chr7 (504-537)||(28501247-28501280)
[»] chr4 (3 HSPs)
chr4 (504-537)||(4958503-4958536)
chr4 (504-537)||(23778772-23778805)
chr4 (504-532)||(624575-624603)
[»] chr2 (3 HSPs)
chr2 (504-537)||(40403639-40403672)
chr2 (504-537)||(41298552-41298585)
chr2 (504-537)||(43936791-43936824)
[»] chr1 (1 HSPs)
chr1 (504-537)||(10478230-10478263)
[»] chr3 (1 HSPs)
chr3 (505-537)||(9229886-9229918)


Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 1286030 - 1286533
Alignment:
Q  11 cgaagaatatgtaatatattttggtactgaaaacaagttagtgtacaaataatttaatgtcccaaaaataatctattaaaaaagctatggctctgaaaga 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1286030 cgaataatatgtaatatattttggtactgaaaacaagttagtgtacaaataatttaatgtcccaaaaataatctattaaaaaagctatggctctgaaaga 1286129  T
Q  111 tgattttgaaaggaagaaaatatcaaaactactttgctgacacatatagctacatatatatgaaggaccagcttcaaaagtttgtatgacnnnnnnnnat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  1286130 tgattttgaaaggaagaaaatatcaaaactactttgctgacacatatagctacatatatatgaaggaccagcttcaaaagtttgtatgacttttttttat 1286229  T
Q  211 gacactgaaacttacttctcaaaaccctnnnnnnnnnnnnnnnnnnntttcgggtggtcaatttccaagttcgattgtggttactgcccagtgcccacag 310  Q
    ||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1286230 gacactgaaacttacttctcaaaaccct--acacacacacacaacactttcgggtggtcaatttccaagttcgatagtggttactgcccagtgcccacag 1286327  T
Q  311 tatcatgataacatgatcgtaaaccacacaacacnnnnnnnccctcctgttctacttttgaaaaagttaaataaaaggttattttagtttatctttgaat 410  Q
    |||||||||||||||||||||||||||||||||             || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1286328 tatcatgataacatgatcgtaaaccacacaaca-------------cttttctacttttgaaaaagttaaataaaaggttattttagtttatctttgaat 1286414  T
Q  411 aaatatagatatagatgatttatccaacatctattgataattagtcatgtaaataaatttgtaagtagaatgaatcgtgtacaagnnnnnnnngtcaagt 510  Q
    ||||||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||||||||||||         |||||     
T  1286415 aaatatagatatagatgatttatccaac--------ataattagtcatggaaataaatttgtaagtagaatgaatcgtgtacaagttttttttttcaagc 1286506  T
Q  511 agtttagtggttagagctcacataatt 537  Q
    || ||||||| ||||||||||||||||    
T  1286507 agcttagtggctagagctcacataatt 1286533  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Complemental strand, 32258130 - 32258097
Alignment:
Q  504 gtcaagtagtttagtggttagagctcacataatt 537  Q
    ||||||||||||||||||||||||||||| ||||    
T  32258130 gtcaagtagtttagtggttagagctcacacaatt 32258097  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Complemental strand, 28501280 - 28501247
Alignment:
Q  504 gtcaagtagtttagtggttagagctcacataatt 537  Q
    ||||||||||||||||||||||||||||| ||||    
T  28501280 gtcaagtagtttagtggttagagctcacacaatt 28501247  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Original strand, 4958503 - 4958536
Alignment:
Q  504 gtcaagtagtttagtggttagagctcacataatt 537  Q
    |||||||||||||||||||| |||||||||||||    
T  4958503 gtcaagtagtttagtggttaaagctcacataatt 4958536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Original strand, 23778772 - 23778805
Alignment:
Q  504 gtcaagtagtttagtggttagagctcacataatt 537  Q
    ||||||||||||||||||||||||||||| ||||    
T  23778772 gtcaagtagtttagtggttagagctcacacaatt 23778805  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 532
Target Start/End: Complemental strand, 624603 - 624575
Alignment:
Q  504 gtcaagtagtttagtggttagagctcaca 532  Q
    |||||||||||||||||||||||||||||    
T  624603 gtcaagtagtttagtggttagagctcaca 624575  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Complemental strand, 40403672 - 40403639
Alignment:
Q  504 gtcaagtagtttagtggttagagctcacataatt 537  Q
    ||||||||||||||||||||||||||||| ||||    
T  40403672 gtcaagtagtttagtggttagagctcacacaatt 40403639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Complemental strand, 41298585 - 41298552
Alignment:
Q  504 gtcaagtagtttagtggttagagctcacataatt 537  Q
    ||||||||||||||||||||||||||||| ||||    
T  41298585 gtcaagtagtttagtggttagagctcacacaatt 41298552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Complemental strand, 43936824 - 43936791
Alignment:
Q  504 gtcaagtagtttagtggttagagctcacataatt 537  Q
    ||||||||||||||||||||||||||||| ||||    
T  43936824 gtcaagtagtttagtggttagagctcacacaatt 43936791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Complemental strand, 10478263 - 10478230
Alignment:
Q  504 gtcaagtagtttagtggttagagctcacataatt 537  Q
    ||||||||||||||||||||||||||||| ||||    
T  10478263 gtcaagtagtttagtggttagagctcacacaatt 10478230  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 537
Target Start/End: Original strand, 9229886 - 9229918
Alignment:
Q  505 tcaagtagtttagtggttagagctcacataatt 537  Q
    ||||||||| |||||||||||||||||||||||    
T  9229886 tcaagtagtatagtggttagagctcacataatt 9229918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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