View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_17 (Length: 551)
Name: NF16177_low_17
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 27 - 535
Target Start/End: Original strand, 49921428 - 49921936
Alignment:
| Q |
27 |
cagaagaaaaaacagctacagggtagctaaacagcatctattgtcgaacgaactgaactcgaagtgcatcatcatgcagaagaggcaagataccatcagg |
126 |
Q |
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| T |
49921428 |
cagaagaaaaaacagctacagggtagctaaacagcttctattgccgagcgaactgaactcgaagtgcatcatcctgcagcagaggcaagataccatcagg |
49921527 |
T |
|
| Q |
127 |
tggttctacaaactcctgccaagcttcgttatagttcgcgcccatcttcgccatgaaatcagtcgtggcattcgcctcccgccacgtatgactcagttgt |
226 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49921528 |
tggttctacaaactcctgccaagcttcgttacagttcgcgcccatcttcgccatgaaatcagctgtggcattcgcctcccgccacgtatgactcagttgt |
49921627 |
T |
|
| Q |
227 |
aaatgccaatcgtgagtcatcaggtcctttatattgctgataatgggtgcaaaaaggtgccaaggattcaccgttgtgttaaccagttgaatggccaacg |
326 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
49921628 |
aaatgccaatcgcgagccatcaggtcctttatattgctgataatgggtgcaaaaaggtgtcaaggattcaccattgtgttaaccagttgaatggccaacg |
49921727 |
T |
|
| Q |
327 |
tggagtcggagtaacaaacaagatgcatatgcccctgatcccacgcaactcgcaaaccatgataaagagccagcaactcagcctgaagaatggatgaaaa |
426 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49921728 |
tggagtcggagtaacaaacaagatgcctatgcccctgatcctacgcaactcacaaaccatgataaagagccagcaactcagcctgaagaatggatgaaaa |
49921827 |
T |
|
| Q |
427 |
accaatgtttcctccaaagccatatatccacgacccatcatgtcttcgtaaaactcctccaaagccagagatgcctgggttaccgaagctgctaccatca |
526 |
Q |
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| T |
49921828 |
accaatgtttcctccaaagccatatatccacgacccatcatgtcttcgtaaaacgcctccaaagccagagatgcctgggttaccgaagctactaccatca |
49921927 |
T |
|
| Q |
527 |
acgttaagt |
535 |
Q |
| |
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||||||||| |
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| T |
49921928 |
acgttaagt |
49921936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 167 - 534
Target Start/End: Complemental strand, 13799889 - 13799521
Alignment:
| Q |
167 |
cccatcttcgccatgaaatcagtcgtggcattcgcctcccgccacgtatgactcagttgtaaatgccaatcgtgagtcatcaggtcctttatattgctga |
266 |
Q |
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||||||||| |||||||||||| || ||||| ||||||| |||||||||||||||||| |||| ||| ||| ||| ||| || ||||| |||||||||| |
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| T |
13799889 |
cccatcttcaccatgaaatcagctgtagcatttgcctcccaccacgtatgactcagttggaaattccagtcgcgagccattagatccttgatattgctga |
13799790 |
T |
|
| Q |
267 |
taatgggtgcaaaaaggtgccaaggattcaccgttgtgttaaccagttgaatggccaacgtggagtcggagtaacaaacaagatgcatatgcccctgatc |
366 |
Q |
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||| |||||||| |||||||||| ||||||| ||||||||| ||||| |||||| || ||||| ||| |||||| ||||||| ||| || || ||| |
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| T |
13799789 |
taacaggtgcaaagaggtgccaagaattcacctccatgttaaccaattgaaaggccaaagttgagtctgagaaacaaataagatgcctatacctctaatc |
13799690 |
T |
|
| Q |
367 |
ccacgcaactcgcaaaccatgataaagagccagcaactcagcctgaagaatggatgaaaaaccaatgtttcctccaaagccatatatccacgacccatca |
466 |
Q |
| |
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|||||||||||| || |||||||||| |||||||||||| ||||||||||||||| || |||||| || |||||||| || |||||||| || |||||| |
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| T |
13799689 |
ccacgcaactcgtaacccatgataaatagccagcaactccacctgaagaatggatgcaataccaattttccctccaaacccgtatatccaagagccatca |
13799590 |
T |
|
| Q |
467 |
tgtcttcgtaaaactcct-ccaaagccagagatgcctgggttaccgaagctgctaccatcaacgttaag |
534 |
Q |
| |
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|| |||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
13799589 |
tgccttcttaaaactcctaaaaaaaccggagatgcctgggttaccgaagctgctaccatcaacattaag |
13799521 |
T |
|
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