View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_18 (Length: 526)

Name: NF16177_low_18
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_18
NF16177_low_18
[»] chr5 (3 HSPs)
chr5 (10-526)||(36891009-36891525)
chr5 (311-451)||(36878022-36878162)
chr5 (96-129)||(36899683-36899716)


Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 10 - 526
Target Start/End: Complemental strand, 36891525 - 36891009
Alignment:
Q  10 gcagagacatgcaaatttcatgtaataacctaaagttacaaaaaggctatatatataagcttatgacataagctaattccttctttttacatgctcaagt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36891525 gcagagacatgcaaatttcatgtaataacctaaagttacaaaaaggctatatatataagcttatgacataagctaattccttctttttacatgctcaagt 36891426  T
Q  110 taagttattatcccttttggggaacaaatatctatgatgttgtatcagtgaagacacattaaatcatgtatcagttagttaagcatcaatcaaaggaata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36891425 taagttattatcccttttggggaacaaatatctatgatgttgtatcagtgaagacacattaaatcatgtatcagttagttaagcatcaatcaaaggaata 36891326  T
Q  210 aagcnnnnnnnnnnnnnnnnnnnnnggaagaccgatggcattagaatccatttttatcgcataccgaatagagtggccatcaaccctatagagaagaaat 309  Q
    ||||                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36891325 aagcaaaaaaattaaacataaaaaaggaagaccgatggcattagaatccatttttatcgcataccgaatagagtggccatcaaccctatagagaagaaat 36891226  T
Q  310 aatataaagtggtgtagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgctttttcatgatccag 409  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36891225 aatataaagtggtatagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgttttttcatgatccag 36891126  T
Q  410 tggttccacgagtatgccttaatttggcaacaaacaaattaaaatactcaaatcacatatatagtacatttttatatgtcataatataaatgttacataa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36891125 tggttccacgagtatgccttaatttggcaacaaacaaattaaaatactcaaatcacatatatagtacatttttatatgtcataatataaatgttacataa 36891026  T
Q  510 ttctccaacacatgtat 526  Q
    |||||||||||||||||    
T  36891025 ttctccaacacatgtat 36891009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 311 - 451
Target Start/End: Complemental strand, 36878162 - 36878022
Alignment:
Q  311 atataaagtggtgtagttatctggtaacttcatcttgttagaatctgaaccagcctccatctttctcaaatttgatctcattgctttttcatgatccagt 410  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36878162 atataaagtggtatagttatctggtaacttcatcttgttggaatctgaaccagcctccatctttctcaaatttgacctcattgctttttcatgatccagt 36878063  T
Q  411 ggttccacgagtatgccttaatttggcaacaaacaaattaa 451  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  36878062 ggttccacgagtatgccttaatttgtcaacaaacaaattaa 36878022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 36899716 - 36899683
Alignment:
Q  96 ttacatgctcaagttaagttattatcccttttgg 129  Q
    |||||||||||||||||||||||||||| |||||    
T  36899716 ttacatgctcaagttaagttattatcccatttgg 36899683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University