View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_22 (Length: 509)
Name: NF16177_low_22
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 91 - 507
Target Start/End: Original strand, 8191841 - 8192257
Alignment:
| Q |
91 |
tctccaatgatgtatcatgtatctatatttgtgaacagaattgtcaattttcaacgtggatgactaatgcataaattattgtcccacaaattatgatgaa |
190 |
Q |
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| T |
8191841 |
tctccaatgatgtatcatgtatctatatttgtgaacagaattgtcaattttcaacgtggatgactaatgcataaattattgtcccacaaattatgatgaa |
8191940 |
T |
|
| Q |
191 |
gatatttataataataacaagaggtcatgctatgacatccacctcctcaggagaaccaaaagaaatcatgtcaagtgcttcattccaatcagtggggcca |
290 |
Q |
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| T |
8191941 |
gatatttataataataacaagaggtcatgctatgacatccacctgctcaggagaaccaaaagaaatcatgtcaagtgcttcattccaatcaatggggcca |
8192040 |
T |
|
| Q |
291 |
ctgggaacagccacgggatgatgtatcaattgtctctcgctgttactatcaagttgagcataatttctcctgacgttcattagcaagatgattaagaata |
390 |
Q |
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| T |
8192041 |
ctgggaacagccacgggatgatgtatcaattgtctctcgctgttactatcaagttgagcataatttctcctgacattcattagcaagatgattaagaata |
8192140 |
T |
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| Q |
391 |
aaagaagcagtgtacttttttcggcggggtaaaggaaataaaaactcaacaaaaacattttcatacctcaataacgaaccaggaagagatctaaccattc |
490 |
Q |
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| T |
8192141 |
aaagaagcagtgtacttttttcggcggggtaaaggaaaaaaaaactcaacaaaaacattttcatacctcaataacaaaccaggaagagatctaaccattc |
8192240 |
T |
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| Q |
491 |
ctccactttgctctgtg |
507 |
Q |
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| T |
8192241 |
ctccactttgctctgtg |
8192257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 8191770 - 8191816
Alignment:
| Q |
19 |
tgcatcacaaaattattttgaaaactgatgtaaaagctccattttcc |
65 |
Q |
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| T |
8191770 |
tgcatcacaaaattattttgaaaactgatgtaaaagctccattttcc |
8191816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 100 - 505
Target Start/End: Original strand, 42349662 - 42350084
Alignment:
| Q |
100 |
atgtatcatgtatctatatttgtgaacagaattgtcaattttcaacgtggatgactaatgcataaattattgtcccacaaattatgatgaagatatttat |
199 |
Q |
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| T |
42349662 |
atgtatcatgtatctatatgtgtgaaaagaattgccaattttcaaagtggatgactaatgcaagaattattgtcccacaaataat-attaagatattcaa |
42349760 |
T |
|
| Q |
200 |
aataataacaagaggtcatgctatgacatccacctcctcaggagaaccaaaagaaatcatgtcaagtgcttcattccaatcagtggggccactgggaaca |
299 |
Q |
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| T |
42349761 |
aataacagcaagaggc--tgctatgtcatccacctgctcaggagaaccgaaagaaataatgtcaagtgcttcattccaatcagtggggctactggcaaca |
42349858 |
T |
|
| Q |
300 |
gccacgggatgatgtatcaattgtctctcgctgttactatcaagttgagcataatttctcctgacgttcattagcaagatgattaagaataaaagaagca |
399 |
Q |
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| T |
42349859 |
gccacaggacgaggcatcaattgtctctcaatgttactatcaggttgagcataatttctcctgacattaataagcaagatgattaagaataatagaagca |
42349958 |
T |
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| Q |
400 |
gtgtacttttttcgg---------------cggggtaaaggaa-----ataaaaactcaacaaaaacattttcatacctcaataacgaaccaggaagaga |
479 |
Q |
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| T |
42349959 |
ttgtactttttttggtgggggttgttatttaggggtaaaagaaggaacaaaaaaactcaacaacaatatttccatacctcaataacggaccaggaagaga |
42350058 |
T |
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| Q |
480 |
tctaaccattcctccactttgctctg |
505 |
Q |
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|||| ||||| ||||||||||||||| |
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| T |
42350059 |
tctagccatttctccactttgctctg |
42350084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 42349579 - 42349626
Alignment:
| Q |
19 |
tgcatcaca-aaattattttgaaaactgatgtaaaagctccattttcc |
65 |
Q |
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||||||||| |||||||||||||||| ||||||||||| ||||||||| |
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| T |
42349579 |
tgcatcacagaaattattttgaaaacagatgtaaaagcaccattttcc |
42349626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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