View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_23 (Length: 504)
Name: NF16177_low_23
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 123 - 499
Target Start/End: Complemental strand, 4696018 - 4695647
Alignment:
| Q |
123 |
atgtaccggtgattttggcttggaccaacctgaccttgtcttggtattttctcatccttatcagacacggacctcatcaattttgacagagtttagggtc |
222 |
Q |
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| T |
4696018 |
atgtacaggtgattttgacttggaccaacctgatcttgtcttggtattgtctcatccttatctgacacgtacctcatcaattttgacagagtttagggtc |
4695919 |
T |
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| Q |
223 |
gatttcatgtctaaaatttgtcttgagctagtgttagaaccaggttcgggtcatatacaacatggctagtttgtcccttgtacaaccctaatatagatat |
322 |
Q |
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| T |
4695918 |
gatttcatgtcgaaaatttgtcttgagttagtgttagaaccaggttcgggtcatatacaacatagctagttcgtcccttgtacaatcctaatatagatat |
4695819 |
T |
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| Q |
323 |
attttatagagtagcatcaagacgaacatgttccgcttttccattacacttcattatagatttattttattgtacatggttatataatatatttattata |
422 |
Q |
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| T |
4695818 |
a-tttatagagtagcatcaagacggacatgttccgcttttccattacacttcattatagatttattttattgtacatggttatataata----tattata |
4695724 |
T |
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| Q |
423 |
aaagggtaagtcatcacctccctttctcttctaaatcctcaaaccatatactttaatatttattttcctatgctact |
499 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
4695723 |
aaagggtaagtcatcacctccctttctcttctaaatcgtcaaaccatatactttaatatttattttcctatgatact |
4695647 |
T |
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