View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_low_24 (Length: 502)
Name: NF16177_low_24
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 5081228 - 5081488
Alignment:
| Q |
18 |
atgaggttcaattcatggatttgatttctcatagaaagaatttgaatgaaaactttcaagcaatttggttagcatgcattttgtcaatttggaagcattg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5081228 |
atgaggttcaattcatggatttgatttctcagagaaagaatttgaatgaaaactttcaagcaatttggttagcatgcagtttgtcaatttggaagcattg |
5081327 |
T |
|
| Q |
118 |
taactttgtgttgttcgacaatcaggattgcttagctcgtacacctttggacatggtacaaattttggtttggtcatggatcaagtccaaagctaaagac |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5081328 |
taactttgtgttgttcgacaatcaagattgcttagctcgtacacatttggacatggtacagattttggtttggtcatggatcaagtctaaagctaaagac |
5081427 |
T |
|
| Q |
218 |
ttttaggaatcaatggagcactcaacctcttaaatgtctagaattgttatatgtaatgtga |
278 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5081428 |
ttttaagaatcaatggagcactcaacctcttaaatgtctagaattgttatatgtaatgtga |
5081488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 342 - 425
Target Start/End: Original strand, 5081550 - 5081633
Alignment:
| Q |
342 |
aactttgtaacctttcgttcttaaaattcgttatagtttgatgatgttgtttataacatattatatttttaaccttaacctttt |
425 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5081550 |
aactttgtaacctttcgatcttagaattcgttatagtttgatgatgttgtttatgacatattatatttttaaccttaacctttt |
5081633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 50976723 - 50976591
Alignment:
| Q |
90 |
catgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgta-cacctttggacatggtacaaattttggttt |
188 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||| |||| | ||| || |||||||||||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
50976723 |
catgcatttggtcaatttagaagcaccgtaactttgtcatgtttggcaaccatgattgcttagctcgtaacacctttggacattgtacaacttttggttt |
50976624 |
T |
|
| Q |
189 |
ggtcatggatcaagtccaaagctaaagactttt |
221 |
Q |
| |
|
|||| |||||||||| || || |||||| |||| |
|
|
| T |
50976623 |
ggtcgtggatcaagttcagagttaaagattttt |
50976591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 51079855 - 51079723
Alignment:
| Q |
90 |
catgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgta-cacctttggacatggtacaaattttggttt |
188 |
Q |
| |
|
||||||||| |||||||| |||||| |||||||||| |||| | ||| || |||||||||||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
51079855 |
catgcatttggtcaatttagaagcaccgtaactttgtcatgtttggcaaccatgattgcttagctcgtaacacctttggacattgtacaacttttggttt |
51079756 |
T |
|
| Q |
189 |
ggtcatggatcaagtccaaagctaaagactttt |
221 |
Q |
| |
|
|||| |||||||||| || || |||||| |||| |
|
|
| T |
51079755 |
ggtcgtggatcaagttcagagttaaagattttt |
51079723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 15287006 - 15286972
Alignment:
| Q |
180 |
ttttggtttggtcatggatcaagtccaaagctaaa |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15287006 |
ttttggtgtggtcatggatcaagtccaaagctaaa |
15286972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 28412656 - 28412566
Alignment:
| Q |
84 |
ggttagcatgcattttgtcaatttggaagcattgtaactttgtgttgttcgacaatcaggattgcttagctcgtacacctttggacatggt |
174 |
Q |
| |
|
|||||||||| |||| | |||||||||||||| ||| | |||| |||| | ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
28412656 |
ggttagcatgtatttggacaatttggaagcatcctaattatgtggtgtttaataatcaggattgtttatctcgtacacctttggacatggt |
28412566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University