View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_26 (Length: 497)
Name: NF16177_low_26
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 38900308 - 38900520
Alignment:
| Q |
24 |
attcattgaaagggtataaacgtgttggaatgagtacatgtaatatttcacaggctaagttattggttagcttgtttggtaaagggtattgggtgcaatt |
123 |
Q |
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| T |
38900308 |
attcattgaaagggtataaacgtgttggaatgagtacatgtaatatttcacaggctaagttattggttagcttgtttggtaaagggtattgggtgcaatt |
38900407 |
T |
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| Q |
124 |
tgagaactgtaagttggctctgtgttggaagtcaagacctttgacttctgtttcaatctgggtaccaacagattataatatgagtgacaaggtcaaatag |
223 |
Q |
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| T |
38900408 |
tgagaactgtaagttggctctgtgttggaagtcaagacctttgacttctgtttcaatctgggtaccaacagattataatatgagtgacaaggtcaaatag |
38900507 |
T |
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| Q |
224 |
attgaatctaagg |
236 |
Q |
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| T |
38900508 |
attgaatctaagg |
38900520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 274 - 485
Target Start/End: Original strand, 38900558 - 38900769
Alignment:
| Q |
274 |
aaattattgagatgatttcataaggaagtggtgtattatggttgtaggttactttattcattctgatgaatgtaatgcgattatagggtatttcaatata |
373 |
Q |
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| T |
38900558 |
aaattattgagatgatttcataaggaagtggtgtattatggttgtaggttactttattcattctgatgaatgtaatgcgattatagggtatttcaatata |
38900657 |
T |
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| Q |
374 |
tttgaacagatttttaagtttagactctatattattgttgcatgttcttcctatagctcaatatcagcaaaatattcctttaagcatgctatttacgtat |
473 |
Q |
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| T |
38900658 |
tttgtacagatttttaagtttagactctatattattattgcatgttcttcctatagctcaatatcagcaaaatattccttcaagcatgctatttacgtat |
38900757 |
T |
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| Q |
474 |
cagcaacatatt |
485 |
Q |
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| T |
38900758 |
cagcaacatatt |
38900769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 469
Target Start/End: Complemental strand, 18893252 - 18893208
Alignment:
| Q |
425 |
tatagctcaatatcagcaaaatattcctttaagcatgctatttac |
469 |
Q |
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| T |
18893252 |
tatagctcaatttcatcaatatattcctttaagcatgttatttac |
18893208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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