View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_low_27 (Length: 496)
Name: NF16177_low_27
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_27 |
 | |
|
| [»] scaffold0454 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 3749102 - 3749586
Alignment:
| Q |
1 |
cagattcaagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3749102 |
cagattcaagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataattttctcagg |
3749201 |
T |
|
| Q |
101 |
tttccaataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749202 |
tttccaataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatgga |
3749301 |
T |
|
| Q |
201 |
gatttttgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749302 |
gatttttgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcatgtggaaatgtaccggtcaattcacaaagcgcaagactgagggt |
3749401 |
T |
|
| Q |
301 |
ggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749402 |
ggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaa |
3749501 |
T |
|
| Q |
401 |
gaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749502 |
gaatcaaggggtcctgataaatcacagtaagacatgctcaattcttgcaagtcacgcaacggcaacaaagcattgctcaattcat |
3749586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 5858214 - 5858698
Alignment:
| Q |
1 |
cagattcaagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcagg |
100 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||| | |
|
|
| T |
5858214 |
cagatccaagtaactgaggtgtgtgaggtttgacaatgaatttggaagggttccattaaattgacaaaaagaaagatccaattcagataactgcctcaag |
5858313 |
T |
|
| Q |
101 |
tttccaataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatgga |
200 |
Q |
| |
|
|| |||||| | ||||||||| |||| |||||||||||| ||| ||||||||| | |||||||||||||| | |||||||| |||||| | ||| ||| |
|
|
| T |
5858314 |
ttgccaatagagctaggtaatggtccagagaagtttgtgtcactcactctaattctatgaagagattcacttagtgagtagtttggaaatgaaccacgga |
5858413 |
T |
|
| Q |
201 |
gatttttgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggt |
300 |
Q |
| |
|
|||||| |||| ||| |||||||| |||| |||||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||||| |
|
|
| T |
5858414 |
gattttcgttggaaaataagtcaatcacagacaatgttccaatctgaaagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgagggt |
5858513 |
T |
|
| Q |
301 |
ggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaa |
400 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||| |||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5858514 |
agtcaagtttttaaaatttgcaaatgtttcaggaactggggatgaaaaatagttctcatcaagaataatgactgataggttctctagttttgttagggaa |
5858613 |
T |
|
| Q |
401 |
gaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat |
485 |
Q |
| |
|
||||||||||| ||| ||| | ||||| |||||||||||||||| || | || ||||||||||||||||||||| || |||||| |
|
|
| T |
5858614 |
gaatcaaggggacctaatagaccacaggaagacatgctcaattcttgtaggtttcgcaacggcaacaaagcattgatccattcat |
5858698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 7 - 469
Target Start/End: Original strand, 5564956 - 5565418
Alignment:
| Q |
7 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttcca |
106 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| | |||| || ||| |
|
|
| T |
5564956 |
caagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctcaatttgcca |
5565055 |
T |
|
| Q |
107 |
ataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttt |
206 |
Q |
| |
|
||| | |||||||||||||| |||||||||||| ||| ||| |||| | |||||||||||||| | |||||||| ||| || | ||||||||||| | |
|
|
| T |
5565056 |
atagagctaggtaatgctccagagaagtttgtgtaactcactataatgctatgaagagattcacttagtgagtagtctgggaatgaaccatggagattgt |
5565155 |
T |
|
| Q |
207 |
tgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaa |
306 |
Q |
| |
|
||| | ||||||||| |||| |||| |||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
5565156 |
agttaaatgataagtcaataacagacaatgtttcaatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcag |
5565255 |
T |
|
| Q |
307 |
gtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatca |
406 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| || || ||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
5565256 |
gtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagaataatgactgataggttctctagttttgaaagggaagaatca |
5565355 |
T |
|
| Q |
407 |
aggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaa |
469 |
Q |
| |
|
||||||||||| | | ||||| ||||||| ||||| || | |||||| |||||||||||| |
|
|
| T |
5565356 |
aggggtcctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaa |
5565418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 485
Target Start/End: Complemental strand, 5886385 - 5885920
Alignment:
| Q |
20 |
tgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa-agtagataactttctcaggtttccaataatgttaggt |
118 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||||| | |||||| ||||||| |||||| || || ||| ||| ||| ||| || ||| |||| || |
|
|
| T |
5886385 |
tgtgtgagatttgacagtgaattgggaagtgttccatatagttgacagaaagaaatatccaataggag-taagtttgtcatgttaccgatattgtttgga |
5886287 |
T |
|
| Q |
119 |
aatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaaca |
218 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||| | |||||| ||||||| | |||||| | || ||||| |||||||||| ||||| | | | |
|
|
| T |
5886286 |
aatgctccagagaagcttgtgttactcactctaatgctatgaagatattcactaagtgagtaatcagggaaaaaaacatggagattggggttgtcagata |
5886187 |
T |
|
| Q |
219 |
agtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaatt |
318 |
Q |
| |
|
|||||||| |||||||||||| ||| || ||||| ||||||||||| | |||||| | ||| |||| |||||||||| | |||||||||||| |
|
|
| T |
5886186 |
agtcaataattgacagtgttctaatttggaagatcttttgtggaaatgtatctgtcaatccgcaattttgaagattgagggtggttaggtttttaaaatt |
5886087 |
T |
|
| Q |
319 |
ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgat |
418 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
5886086 |
ggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagttttgaaagggaggaatcaaggggtcctgat |
5885987 |
T |
|
| Q |
419 |
aaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat |
485 |
Q |
| |
|
| | ||||| | |||||||||| || ||||||||||||| ||| ||||||||||| ||| |||||| |
|
|
| T |
5885986 |
agactacagttatacatgctcaactcttgcaagtcacgcagcggtaacaaagcattactccattcat |
5885920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 469
Target Start/End: Original strand, 5605283 - 5605736
Alignment:
| Q |
17 |
agttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttccaataatgttag |
116 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||| ||| |||||| | |||| ||| |||||| | ||| |
|
|
| T |
5605283 |
agttgtgtgaggtttgacaatgaattggaaagtgttccattaaattgacaactggaaagatacaattcagataagtgcctcaagttgccaatagagctag |
5605382 |
T |
|
| Q |
117 |
gtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaag-ccatggagatttttgttgttaa |
215 |
Q |
| |
|
||||||||||| ||||| |||||||||| | |||| | |||||||||||||| | |||||||| ||||||||| ||||| || || ||||| | |
|
|
| T |
5605383 |
gtaatgctccagagaagcttgtgttactcgccataatgctgtgaagagattcactaagtgagtagtctggaaaaaaaaccatgaaggttagggttgtcag |
5605482 |
T |
|
| Q |
216 |
acaagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaa |
315 |
Q |
| |
|
| ||||||||| ||||||||||| ||| ||||| || |||||||||| || |||||| ||||| |||| |||||||||| | ||||||||| |
|
|
| T |
5605483 |
ataagtcaatatctgacagtgttctaatttgaaatatattttgtggaaatgttccagtcaatccacaatcgttaagattgagggtggttaggtttttaaa |
5605582 |
T |
|
| Q |
316 |
attggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcct |
415 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| |||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
5605583 |
attggcaaatgtttctggcactggggatgaaaaattgttcccatcaagaagaatgacagataagttctctaaccttgctagggaagaatcaaggggtcct |
5605682 |
T |
|
| Q |
416 |
gataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaa |
469 |
Q |
| |
|
|| ||| |||||| ||||| | ||||| || | |||||| | |||||||||| |
|
|
| T |
5605683 |
gaaaaaccacagtctgacatacctaattcttgtaggtcacggagcggcaacaaa |
5605736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 259 - 483
Target Start/End: Complemental strand, 5583129 - 5582905
Alignment:
| Q |
259 |
tggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccca |
358 |
Q |
| |
|
||||||| |||| |||||| ||||| ||||||||||||||||| || ||||| ||||||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
5583129 |
tggaaatttaccagtcaatccacaagatgcaagactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttccca |
5583030 |
T |
|
| Q |
359 |
tcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgca |
458 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||| | || | || | ||| |
|
|
| T |
5583029 |
tcaagaataatgactgataggttctttagtcttgttagggaagaatcaaggggacctgatagatcacaataagacatactcaatacttggaggttaggca |
5582930 |
T |
|
| Q |
459 |
acggcaacaaagcattgctcaattc |
483 |
Q |
| |
|
|||||||||||||| ||| |||| |
|
|
| T |
5582929 |
ggggcaacaaagcattcctccattc |
5582905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 289 - 485
Target Start/End: Complemental strand, 5847901 - 5847705
Alignment:
| Q |
289 |
aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt |
388 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||||||||| |||||||| |||||||| |||||| || |||||| |||||| | |||||||||||| |
|
|
| T |
5847901 |
aagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaagttgttctcaccaagaacaatgaccgtcaggttctctagt |
5847802 |
T |
|
| Q |
389 |
cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||||||||| | |||| ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
5847801 |
cttgttagggaagaatcaaggggtcctgatagatcacaatcagacatgctcaacttttgcaggtcacgcaaaggcaacaaagcattgctccattcat |
5847705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 17 - 478
Target Start/End: Complemental strand, 5895233 - 5894772
Alignment:
| Q |
17 |
agttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttccaataatgttag |
116 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| | |||||| ||||||||||||| |||| ||| ||| ||| || || ||| | |
|
|
| T |
5895233 |
agttgtgtgaggtttgacagtgaattgggaagtgttccatatagttgacagtaagaaagatccaattccaataagtttgtcatgttaccgatgttgtgtg |
5895134 |
T |
|
| Q |
117 |
gtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaa |
216 |
Q |
| |
|
| | || |||| ||||| ||||||||| | | |||| | |||||||||||||| | |||||||| ||||||||| | |||||||| |||| | | |
|
|
| T |
5895133 |
gaagtggtccagagaagcttgtgttacgcaatataatgctatgaagagattcactaagtgagtagtctggaaaaaaaacttggagattggggttgccaga |
5895034 |
T |
|
| Q |
217 |
caagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaa |
316 |
Q |
| |
|
||||||||| ||||||||| | ||| || ||||| |||||||||||||| ||||| |||| |||| |||||||||| | |||||||||| |
|
|
| T |
5895033 |
taagtcaataactgacagtgtcctaatttggaagatcttttgtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaa |
5894934 |
T |
|
| Q |
317 |
ttggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctg |
416 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||| | || ||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
5894933 |
ttggcaaatgtttctggcaatgaggatgaaaaattgtttcgataaagaataatgactgacaggttctgtagtcttgatagggaagaatcaagggatcctg |
5894834 |
T |
|
| Q |
417 |
ataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctc |
478 |
Q |
| |
|
| |||||||| | ||||||||||||||| || | ||||||||| || | ||||||||||||| |
|
|
| T |
5894833 |
acaaatcacaattagacatgctcaattcttgtaggtcacgcaaaggtatcaaagcattgctc |
5894772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 229 - 473
Target Start/End: Complemental strand, 5570952 - 5570708
Alignment:
| Q |
229 |
tgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgtt |
328 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||||||||| |||||| ||||| | ||||||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
5570952 |
tgacaatgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatgaaagactgagggtggttagttttttaaaattggaaaatgtt |
5570853 |
T |
|
| Q |
329 |
ttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagt |
428 |
Q |
| |
|
| |||||| | ||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| | |
|
|
| T |
5570852 |
tctggcactagggatgagaaatagttcccatcaagaataatgactgataggttctttagtcttgttagggaagaagaaaggggtcctgatagatcacaat |
5570753 |
T |
|
| Q |
429 |
aagacatgctcaattcctgcaagtcacgcaacggcaacaaagcat |
473 |
Q |
| |
|
||||||| |||||| | || | || ||||| ||| |||||||||| |
|
|
| T |
5570752 |
aagacatactcaatacttggaggttacgcagcggaaacaaagcat |
5570708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 258 - 484
Target Start/End: Original strand, 5553616 - 5553842
Alignment:
| Q |
258 |
gtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttccc |
357 |
Q |
| |
|
||||||||||||| || ||| ||||| | |||||| |||||||||| ||||| ||||||||||||||||| || || || || ||||||||||||| |
|
|
| T |
5553616 |
gtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggggaagaaaaattgttcct |
5553715 |
T |
|
| Q |
358 |
atcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgc |
457 |
Q |
| |
|
||||||||||||||| |||||||| | |||| ||| |||||||||||| || || |||| || |||||||| | |||||||||| || || | |||| | |
|
|
| T |
5553716 |
atcaagaataatgaccgataggttttttagttttgatagggaagaatctagtggccctgctagatcacagttatacatgctcaactcttgtagttcacac |
5553815 |
T |
|
| Q |
458 |
aacggcaacaaagcattgctcaattca |
484 |
Q |
| |
|
| ||||||||||||||||||| ||||| |
|
|
| T |
5553816 |
agcggcaacaaagcattgctccattca |
5553842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 230 - 483
Target Start/End: Complemental strand, 5852834 - 5852581
Alignment:
| Q |
230 |
gacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttt |
329 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||| ||||| | |||||| |||||||||| ||||| |||||| |||||||||| |
|
|
| T |
5852834 |
gacagtgttccaatctgaaagatcttctgtggaaatgtaccagtcaatccacaatctgaaagactaagggtggtcaggttttgaaaattagcaaatgttt |
5852735 |
T |
|
| Q |
330 |
tcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagta |
429 |
Q |
| |
|
|| || || || ||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||||||||||||| || |||| || |||||| | |
|
|
| T |
5852734 |
ctggaacgggggaagaaaaattgttcctatcaagaataatgactgataggttccttagttttgatagggaagaatcaagtggccctgctagatcacattt |
5852635 |
T |
|
| Q |
430 |
agacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattc |
483 |
Q |
| |
|
| ||| |||||| || | ||||||| |||||||||||||||||| |||| |
|
|
| T |
5852634 |
atacaagctcaacatttgtagttcacgcagtggcaacaaagcattgctccattc |
5852581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 218 - 485
Target Start/End: Original strand, 5559376 - 5559643
Alignment:
| Q |
218 |
aagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaat |
317 |
Q |
| |
|
||||||||| ||||| ||||||||| || ||||| | ||||||||||| | |||||| |||| |||||||| ||||| ||||| ||| | |||| |
|
|
| T |
5559376 |
aagtcaataaatgacaatgttccaatttggaagatcttatgtggaaatgtatcagtcaatctacaagctgcaagactaagggttgtcaaatttctgaaat |
5559475 |
T |
|
| Q |
318 |
tggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttagggaagaatcaaggggtcctga |
417 |
Q |
| |
|
||| |||||||| ||||| || || ||||||||||| |||||||||||||||| |||| |||| |||||||| || || |||||||||||||||| |
|
|
| T |
5559476 |
tggaaaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatgatcgataaattctttagtcttgacagagatgaatcaaggggtcctgt |
5559575 |
T |
|
| Q |
418 |
taaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat |
485 |
Q |
| |
|
||||| |||| ||||||| ||| ||| | | |||||||||||||||||||||||||| |||||| |
|
|
| T |
5559576 |
taaattgcagttagacatggtcagttcttctagaccacgcaacggcaacaaagcattgctccattcat |
5559643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 485
Target Start/End: Complemental strand, 5539030 - 5538833
Alignment:
| Q |
288 |
caagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctag |
387 |
Q |
| |
|
||||||| ||||| ||||| ||| | ||||||| |||||||| |||||||| || ||||||||||| ||||| |||||||||| ||||| |||||||| |
|
|
| T |
5539030 |
caagactaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctag |
5538931 |
T |
|
| Q |
388 |
tcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat |
485 |
Q |
| |
|
||||| || || || ||||| ||||||| ||||| ||||| ||||||| ||| ||| | | || | ||||||||||||||||||||| |||||| |
|
|
| T |
5538930 |
tcttgacagagatgattcaagaggtcctgttaaattacagttagacatggtcagttcttctagaccatgtaacggcaacaaagcattgctccattcat |
5538833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 485
Target Start/End: Original strand, 5613627 - 5613740
Alignment:
| Q |
372 |
ctgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagc |
471 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| |||||||||| || ||||| ||||||||||| ||| || | ||| | ||| ||||||||||| |
|
|
| T |
5613627 |
ctgataggttctctagttttgaaagggaagaatcaagaggtcctgatagattacagttagacatgctcagttcttgtaggtcgctcaaaggcaacaaagc |
5613726 |
T |
|
| Q |
472 |
attgctcaattcat |
485 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
5613727 |
attgatccattcat |
5613740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 5853057 - 5852983
Alignment:
| Q |
7 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa |
81 |
Q |
| |
|
||||||||| |||| ||| |||||||| |||||||| |||||||||||||| |||||| || |||||||||||| |
|
|
| T |
5853057 |
caagtaacttagttctgttaggtttgaaaatgaattgggaagtgttccattaaattgagaattagaaagatccaa |
5852983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 5553367 - 5553441
Alignment:
| Q |
7 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa |
81 |
Q |
| |
|
||||||||| |||| ||| |||||||| |||||||| |||||||||||||| ||||| || |||||||||||| |
|
|
| T |
5553367 |
caagtaacttagttctgttaggtttgaaaatgaattgggaagtgttccattatattgagaattagaaagatccaa |
5553441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 252378 - 252329
Alignment:
| Q |
17 |
agttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgaca |
66 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
252378 |
agttttgtgaggtttgacaatgaattgggaagtgtaccattaaattgaca |
252329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 485
Target Start/End: Complemental strand, 252057 - 251993
Alignment:
| Q |
421 |
atcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat |
485 |
Q |
| |
|
|||||||| |||||||||||| || |||| |||| || ||||||||||||||||| | |||||| |
|
|
| T |
252057 |
atcacagttagacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcat |
251993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 485
Target Start/End: Original strand, 1485703 - 1485888
Alignment:
| Q |
300 |
tggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggga |
399 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || | ||| ||||||| ||||||| |||||||||||||| | ||||||||||||| ||| ||||| |
|
|
| T |
1485703 |
tggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggga |
1485802 |
T |
|
| Q |
400 |
agaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat |
485 |
Q |
| |
|
||||||| ||||||||||| | ||| | ||||||||| | |||| ||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
1485803 |
ggaatcaacgggtcctgatagactacaattgctcatgctcaacacttgcagctcacgcagcggcaacaaggcattgctccattcat |
1485888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 1483224 - 1483456
Alignment:
| Q |
20 |
tgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttccaataatgttaggta |
119 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||| |||||||| ||| ||||||||| |||||| | |||| || |||||| ||| |||| |
|
|
| T |
1483224 |
tgtgtgaggttggacattgaattgggaagtgttccattaaattgacagtaaggaagatccaattcagataagtacctcaatttgccaatagagtttggta |
1483323 |
T |
|
| Q |
120 |
atgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaacaa |
219 |
Q |
| |
|
|| |||| | || |||||| ||| ||||||||| | ||||||||||||| | |||||||| |||||| | ||||| |||| ||||||| | | || |
|
|
| T |
1483324 |
attctcctgataaacttgtgtaactaactctaattctacgaagagattcactaagtgagtagtttggaaatgaaccatgaagatcgttgttgtaatataa |
1483423 |
T |
|
| Q |
220 |
gtcaatagttgacagtgttccaatctgaaagat |
252 |
Q |
| |
|
||| ||| |||||||| | ||||||||||||| |
|
|
| T |
1483424 |
gtcgataaatgacagtgctgcaatctgaaagat |
1483456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 485
Target Start/End: Original strand, 884 - 1070
Alignment:
| Q |
300 |
tggtcaagtttttaaaatt-ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggg |
398 |
Q |
| |
|
|||||| |||||||||||| || |||||||| || | ||| ||||||| ||||||| |||||||||||||| | ||||||||||||| ||| |||| |
|
|
| T |
884 |
tggtcaggtttttaaaattaggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggg |
983 |
T |
|
| Q |
399 |
aagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat |
485 |
Q |
| |
|
| ||||||| ||||||||||| | ||| | ||||||||| | |||| ||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
984 |
aggaatcaacgggtcctgatagactacaattgctcatgctcaacacttgcagctcacgcagcggcaacaaggcattgctccattcat |
1070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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