View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_30 (Length: 473)
Name: NF16177_low_30
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 5e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 261 - 455
Target Start/End: Complemental strand, 6817292 - 6817098
Alignment:
| Q |
261 |
tgaaccaagccgcactgagaaaaccgaactgtaattgacagttcacgaacttaaccagtttggtgcagttcaatttgtgaactatctatcacagtttggt |
360 |
Q |
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| T |
6817292 |
tgaaccaagccgcactgagaaaaccaaactgtaattgacagttcacgaacttaaccagtttggtgcagttcaattcgtgaactatctgtcacagtttggt |
6817193 |
T |
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| Q |
361 |
tattttaggtgcagttcaattcggtttttggtctatttaaacaatcctaaggtccgatttcgttcagattatggtttttcctagaagtaatgatt |
455 |
Q |
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| T |
6817192 |
tcttttaggtgcagttcaattcggtttttggtctatttaaacaatcctaaggtccgatttcgttcggattatggtttttcctagaagtaatgatt |
6817098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 2 - 185
Target Start/End: Complemental strand, 6817496 - 6817309
Alignment:
| Q |
2 |
gtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggtataaggtaaa |
101 |
Q |
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| T |
6817496 |
gtgcattgcaccttgctgctacttatagaaggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggtataaggtaaa |
6817397 |
T |
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| Q |
102 |
gagtatttctccatttttaattatttgtcttctct----tatagtttagaaatcttcacaaactagcaatttgtcatgtcacatagga |
185 |
Q |
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| T |
6817396 |
gagtatttctccatttttaattatttgtcttctcttatatatagtttagaaatcttcacaaactagcaatttgtcatgtcacatagga |
6817309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 6809357 - 6809183
Alignment:
| Q |
1 |
agtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggtataaggtaa |
100 |
Q |
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| T |
6809357 |
agtgcattgcaccttgctgctacttatagaaggtttaagccttggcgtgtacctggtgcggcaatgcaaatgcagtgggaatacaagtggtataaggtaa |
6809258 |
T |
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| Q |
101 |
agagtatttctccatttttaattatttgtcttctcttatagtttagaaatcttcacaaactagcaatttgtcatgt |
176 |
Q |
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| T |
6809257 |
agattatttctccatatttagttatttaccctc-cctataatttagaaattttcacaaactagcaatttgtcatgt |
6809183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6832000 - 6831902
Alignment:
| Q |
1 |
agtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggtataaggta |
99 |
Q |
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| T |
6832000 |
agtgcattgcatcttgctgctacttataggaggtttaagccttggcgtgtgcccggtgctgcaatgcaaatgcagtgggaatacaagtggtataaggta |
6831902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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