View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_33 (Length: 460)
Name: NF16177_low_33
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 42 - 338
Target Start/End: Original strand, 32605563 - 32605852
Alignment:
| Q |
42 |
ttatatgcatctctatataaaaataaaatttattgtact---attgtaatttcactttattttgtgtttgcttaatttatgggaagtaggagatgttttg |
138 |
Q |
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| T |
32605563 |
ttatatgcatctctatataaaaataaaatttattgtactcttattgtaatttcactttattttgtgtttgcttaatttatgggaagtaggagatgttt-g |
32605661 |
T |
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| Q |
139 |
atttcgttgaccatcaaatggaatttacgtttagtgctttgtcatgacgcaagcaatttggttcctttgtgctgttaagtaagagtgggtgttgtacatg |
238 |
Q |
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| T |
32605662 |
atttcgttgaccatcaaatggaatttacgtttagtgctttgtcatgacgcaagcaattttgttcctttgtgctgttaagtaagagtgggtgttgtacatg |
32605761 |
T |
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| Q |
239 |
tggacaccatttttaaagatacgaatgagtaaaacgttatcatttctctagaggcttttacctctaataactaataacaactaccctaagtcaattcctt |
338 |
Q |
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| T |
32605762 |
tggacaccatttttaaagatacgaatgagtaaaacgttatcatttctctaggggc--------ctaataactaataacaa-taccctaagtcaattcctt |
32605852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 445
Target Start/End: Complemental strand, 8076575 - 8076483
Alignment:
| Q |
354 |
ggaaaattttacatagacaccttttatttt-agatatttttatacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgc |
445 |
Q |
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| T |
8076575 |
ggaaaatgttacatagacaccatttattctcatacacttttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgc |
8076483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 42354548 - 42354604
Alignment:
| Q |
395 |
tacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgcctatgt |
451 |
Q |
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| T |
42354548 |
tacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgcttatgt |
42354604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 444
Target Start/End: Original strand, 31952948 - 31953039
Alignment:
| Q |
354 |
ggaaaattttacatagacaccttttatttt-agatatttttatacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtg |
444 |
Q |
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| T |
31952948 |
ggaaaatgttacatagacaccatttattctcatacatccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtg |
31953039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 38296347 - 38296293
Alignment:
| Q |
391 |
tttatacatcccatgtactaggaagaaagaagaatagatgaaagagaaagtgtgc |
445 |
Q |
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| T |
38296347 |
tttatacaccccatgtagtaagaagaaagaagaggagatgaatgagaaagtgtgc |
38296293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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