View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_low_38 (Length: 421)
Name: NF16177_low_38
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 406
Target Start/End: Original strand, 6568640 - 6569053
Alignment:
| Q |
15 |
ttgtttcatttcaaaatacataataatataatannnnnnnaagattcaaactaatacctttttggcaatgctattcaatcttacctgataactttcattg |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6568640 |
ttgtctcatttcaaaatacataataatataatatttttttaagattcaaactaatacctttttggcaatgctattcaatcttacctgataactttcattg |
6568739 |
T |
|
| Q |
115 |
acaacccagattaacccta----------------------attatgttattcaacttgtttctatcttcacaaagggttaatatgttttacaaaattat |
192 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6568740 |
acaacgcagattaaccttaaaccaaaagatgatgtattttaattatgttattcaacttgtttctatcttcacaaagggttaatatgttttacaaaattat |
6568839 |
T |
|
| Q |
193 |
tggataacaaaactctaattacagagaaagaatgatctagatcgaaaaattaagttaaagtgtgggagggggtgtagaggccatctcaaataaccacaag |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6568840 |
tggataacaaaactctaattacagagaaagaatgatctagatcgaaaaattaagttaaagtgtgggagggggtgtagaggccatctcaaataaccacaag |
6568939 |
T |
|
| Q |
293 |
aaaactcaggctgtgtacacaaaattcagaaactatataatatctgggatttggtgtgagaactttttctcctttcccatcagttgtgtccttacaatga |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6568940 |
aaaactcaggctgtgtacacaaaattcagaaactatatgatatctgggatttggtgtgagaactttttctcctttcccatcagttgtgtccttacaatga |
6569039 |
T |
|
| Q |
393 |
agttatgttaactc |
406 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6569040 |
agttatgttaactc |
6569053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University