View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_40 (Length: 417)
Name: NF16177_low_40
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Complemental strand, 34881300 - 34880899
Alignment:
| Q |
8 |
gagatgaatagg-atactaaagccagtcattcaaaggttgaaaactcaatatgtcttgcaggtcagtgttgactacctaacaaagcctcttgatattttc |
106 |
Q |
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| T |
34881300 |
gagatgaatagggatactgaagccagtcattcaaaggttgaaaactcaatatgtcttgcaggtcagtgttgactacctaacaaagcctcttgatattttc |
34881201 |
T |
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| Q |
107 |
aaggagatgagtaggatactcaagccaggtggattggccataatgaggtgacaatcttgtcagctatcatttctgtaaaatctaataattgaaagaaaat |
206 |
Q |
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| T |
34881200 |
aaggagatgaataggatactcaagccaggtggattggccataatgaggtgacaatcttgtcagctatcatttctgtaaaatctaataattgaaagaaaat |
34881101 |
T |
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| Q |
207 |
tttcatgaagcactttcctacaaaattgtcacttgcttagatattcaatcatgttcatctattattggtcttgtacatcttatg-------ctcctattc |
299 |
Q |
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| T |
34881100 |
tttcatgaagcactttcctacaaaattgtcacttgcttagatattcaatcatgttcatctattattggtcttgtacatcttatgctccatgctcctattc |
34881001 |
T |
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| Q |
300 |
aactaactacaacttcatcgatgatttcagcttttcaaacagatgcttctttacaaaagccatttctatatggacatcaaccggggatgctgatcatgtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34881000 |
aactaactacaacttcatcgatgatttcagcttttcaaacagatgcttctttacaaaagccatttctatatggacatcaaccggggatgccgatcatgtt |
34880901 |
T |
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| Q |
400 |
at |
401 |
Q |
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|| |
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| T |
34880900 |
at |
34880899 |
T |
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