View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_low_42 (Length: 412)
Name: NF16177_low_42
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_42 |
 |  |
|
| [»] scaffold0294 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 5285548 - 5285144
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5285548 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
5285449 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattat-caaaacaaactg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
5285448 |
gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgatgtattataaaaaaaaaactg |
5285349 |
T |
 |
| Q |
200 |
taagactttgta----nnnnnnnnnnnaaaatttggatttaaagcatttaaagcttaagaatttaaaagaaacatttatagttgtcatcatccatttgtt |
295 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5285348 |
taagactttgtataatgtttttatttttttttttggatttaaagcatttaaagcttaagaatttaaaagaaacatttatagttgtcatcatccatttgtt |
5285249 |
T |
 |
| Q |
296 |
ttgttgattatcatcaagaataattttggctgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcatggctagttttatatcc |
395 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
5285248 |
ttgttgattatcatcgagaataattttgactgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcatggccagttttatattc |
5285149 |
T |
 |
| Q |
396 |
acctt |
400 |
Q |
| |
|
||||| |
|
|
| T |
5285148 |
acctt |
5285144 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 400
Target Start/End: Complemental strand, 5261545 - 5261147
Alignment:
| Q |
5 |
atgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5261545 |
atgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgttgcgagatatgggaag |
5261446 |
T |
 |
| Q |
105 |
aggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga |
204 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5261445 |
agaaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtgtgatcaggaggatgtgattgatgtattatcaaaacaaactgtaaga |
5261346 |
T |
 |
| Q |
205 |
ctttgt---annnnnnnnnnnaaaatttggatttaaagcatttaaagcttaagaatttaaaagaaacatttatagttgtcatcatccatttgttttgttg |
301 |
Q |
| |
|
||| || | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
5261345 |
cttcgtataatttttttttttaaaatttggatttaaagcatttaaaacttaagaatttaaaagaaatatttatagtggtcagcatccatttgttttgttg |
5261246 |
T |
 |
| Q |
302 |
attatcatcaagaataattttggctgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcatggctagttttatatccacctt |
400 |
Q |
| |
|
||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
5261245 |
attatcatcgaaaattattttggctgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcatggccagttttatattcacctt |
5261147 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5445676 - 5445879
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5445676 |
ctttctgcagaaattggaataagtgtccttgttgctcgaagccttgtgactgttgatgataagaacatgcttggaatgcatggtcagctgcgagatatgg |
5445775 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgt |
200 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
5445776 |
gaagaggaatcgtttgtgaggaatcaccaaggaggcctgagaaacgtagtaggttgtgggatcaggaggatgtgattgatgtattatcaagacaaactgt |
5445875 |
T |
 |
| Q |
201 |
aaga |
204 |
Q |
| |
|
|||| |
|
|
| T |
5445876 |
aaga |
5445879 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5342293 - 5342496
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||| |||||||||| | |||||| ||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
5342293 |
ctttttgcagaaattggaataagtgttcttgttgagcgaagccttgtaattgttgacagcaagaacaaacttggaatgcacgatttgctgcgagatatgg |
5342392 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgt |
200 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||| | || || | | |||||||||||||| | | |||||||||| |||| ||||||||| ||||||| || |
|
|
| T |
5342393 |
gaagagaaatcgttcgtgagaaatcaccaaaggagcttggggagcgtagcaggttgtgctttaaggaggatgtgcttgatgtattatcagaacaaaccgt |
5342492 |
T |
 |
| Q |
201 |
aaga |
204 |
Q |
| |
|
|||| |
|
|
| T |
5342493 |
aaga |
5342496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 5183350 - 5183167
Alignment:
| Q |
6 |
tgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaaga |
105 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||| ||||| || |||||||| |||||| |||||||||||||| |
|
|
| T |
5183350 |
tgcagaaattggagtaagtgtccttgttgagagaagccttgtaactgttgatgataggaacaaactgcaaatgcatgatttgctaagagatatgggaaga |
5183251 |
T |
 |
| Q |
106 |
ggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatca |
189 |
Q |
| |
|
| ||| ||||||||| | ||||||| ||||||| | |||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
5183250 |
gaaatcgttcgtgagaagtcaccaaaagagcctgaggagcgtagcaggttgtggtttaacaaggatgtgattgacgtattatca |
5183167 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5094640 - 5094843
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||| | || ||||| | ||||||||||||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
5094640 |
ctttttgctgaaattggaataagtatccttgttgagcgtagtcttgtaactgttgatgataagaacaaacttggaatgcatgatttgttgcgagatatgg |
5094739 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactg |
199 |
Q |
| |
|
|||||| ||| |||||||| |||||||| |||| || ||| | ||| |||||||||||| || || |||||| || | ||||||||| ||||||||| |
|
|
| T |
5094740 |
gaagagaaatcattcgtgagaaatcaccagagga-gctcgaggagcgttgcaggttgtggtttcatgatgatgtgcttcatgtattatcagaacaaactg |
5094838 |
T |
 |
| Q |
200 |
taaga |
204 |
Q |
| |
|
||||| |
|
|
| T |
5094839 |
taaga |
5094843 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 5691514 - 5691390
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| |||||||||||| ||||||||||| ||||| |||| ||||||||| |||| |||||||||||| |
|
|
| T |
5691514 |
ctttatgcaggaattggaataaatgtccttgtggagcgaagccttgtgactgttgatgataggaacaggcttagaatgcatgatttgttgcgagatatgg |
5691415 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatc |
125 |
Q |
| |
|
|||||| ||| ||||||||| |||| |
|
|
| T |
5691414 |
gaagagaaatcgttcgtgagaaatc |
5691390 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 5158895 - 5158701
Alignment:
| Q |
10 |
gaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaa |
109 |
Q |
| |
|
||||||||||||||| ||||||||||| | || ||||| | |||||||| |||||||| ||||||||||||| |||| |||||||||||||||||| || |
|
|
| T |
5158895 |
gaaattggaataagcatccttgttgagcgtagtcttgttactgttgatggtaagaacaaacttggaatgcatgatttgttgcgagatatgggaagagaaa |
5158796 |
T |
 |
| Q |
110 |
ttgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga |
204 |
Q |
| |
|
| |||||||| |||||||| ||||| | ||| | ||| |||||||||||| || || |||||| || | ||||||||| |||||||||||||| |
|
|
| T |
5158795 |
tcattcgtgagaaatcaccagaggagatc-gaggagcgttgcaggttgtggtttcatgacgatgtgcttcatgtattatcagaacaaactgtaaga |
5158701 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 5104275 - 5104147
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| |||| ||| | | ||||||||||||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
5104275 |
ctttttgcagaaattggaataagtatccttgttgagcgaagtcttataactgttgatgataagaacaaacttggaatgcatgatttgttgcgagatatgg |
5104176 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcacca |
129 |
Q |
| |
|
|||||| ||| |||||||| |||||||| |
|
|
| T |
5104175 |
gaagagaaatcattcgtgagaaatcacca |
5104147 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5369059 - 5369262
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||| |||| ||||| | ||||||||||||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
5369059 |
ctttttgctgaaattggaataagtatccttgttgagcgaagtcttgtcactgttgatgataagaacaaacttggaatgcatgatttgttgcgagatatgg |
5369158 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactg |
199 |
Q |
| |
|
|||||| ||| |||||| | |||||||| | || || ||| | ||| |||||||||||| || ||||||||| || | ||||||||| | ||||||| |
|
|
| T |
5369159 |
gaagagaaatcattcgtgggaaatcaccagaaga-gctcgaggagcgttgcaggttgtggtttcatgaggatgtgcttcatgtattatcagatcaaactg |
5369257 |
T |
 |
| Q |
200 |
taaga |
204 |
Q |
| |
|
||||| |
|
|
| T |
5369258 |
taaga |
5369262 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5356019 - 5355892
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||| |||||||||| | ||||||||||||||| | |||| ||||||||| |||||| |||||||||| |
|
|
| T |
5356019 |
ctttatgctgaaattggaataagtattcttgttgagcgaagccttgtaactgttgatgataagaataggcttagaatgcatgatttgctacgagatatgg |
5355920 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcacc |
128 |
Q |
| |
|
|||||| | | ||||||||| ||||||| |
|
|
| T |
5355919 |
gaagagaagtcgttcgtgagaaatcacc |
5355892 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 5395642 - 5395801
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||||| |||||||||| | ||||||||||| ||||| |||| |||||||| |||||| ||||||||| |
|
|
| T |
5395642 |
ctttttgcagaaattggagtaagtgtccttgttgagcgaagccttgtaactgttgatgataggaacagacttgcaatgcatgatttgctaagagatatgg |
5395741 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggt |
160 |
Q |
| |
|
|||||| ||| ||||||||| | ||||||| ||| ||| | |||||||||||||||| |
|
|
| T |
5395742 |
gaagagaaatcgttcgtgagaagtcaccaaaagagcccgaggagcgtagcaggttgtggt |
5395801 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5068477 - 5068274
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||| |||| || || | ||||||| | ||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
5068477 |
ctttttgctgaaattggaataagtatccttgttgagcgaagtctggttattgttgataaaaagaacaaacttggaatgcatgatttgttgcgagatatgg |
5068378 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactg |
199 |
Q |
| |
|
|||||| ||| ||||||| | |||||||| | || || ||| | ||| |||||||||||| || |||||||| | || | ||||||||| ||||||||| |
|
|
| T |
5068377 |
gaagagaaatcgttcgtgggaaatcaccagaaga-gctcgaggagcgttgcaggttgtggtttcaggaggatgcgcttcaagtattatcagaacaaactg |
5068279 |
T |
 |
| Q |
200 |
taaga |
204 |
Q |
| |
|
||||| |
|
|
| T |
5068278 |
taaga |
5068274 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5133308 - 5133181
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| ||| |||||||||||||| | ||| |||||||||||||||| | |||||||| |||| ||| |||||||||||||| |||| || ||||||||| |
|
|
| T |
5133308 |
ctttttgccgaaattggaataagtattcttattgagagaagccttgtaactgttgatgctaaggacaggcttggaatgcatgatttgttgagagatatgg |
5133209 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcacc |
128 |
Q |
| |
|
|||||| |||| ||||||| |||||||| |
|
|
| T |
5133208 |
gaagagaaattattcgtgaagaatcacc |
5133181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5424352 - 5424555
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||| | || ||||| | |||||||||||| |||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
5424352 |
ctttttgctgaaattggaataagtatccttgttgagcggagtcttgtcactgttgatgataataacaaacttggaatgcatgatttgttgcgagatatgg |
5424451 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactg |
199 |
Q |
| |
|
|||||| ||| |||||| | |||||||| | || || ||| | ||| |||||||||||| || ||||||||| || | ||||||||| | ||||||| |
|
|
| T |
5424452 |
gaagagaaatcattcgtgggaaatcaccagaaga-gctcgaggagcgttgcaggttgtggtttcatgaggatgtgcttcatgtattatcagatcaaactg |
5424550 |
T |
 |
| Q |
200 |
taaga |
204 |
Q |
| |
|
||||| |
|
|
| T |
5424551 |
taaga |
5424555 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5075134 - 5075016
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| ||| ||||||||| |||| || ||||||||| |||||||||| | ||| ||||||| ||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
5075134 |
ctttttgctgaaattggagtaagtgtacttgttgagcgaagccttgtaactgtcgatgataggaacaagcttggaatgcatgatttgctgcgtgatatgg |
5075035 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtga |
119 |
Q |
| |
|
|||||| ||| ||||||| |
|
|
| T |
5075034 |
gaagagaaatcattcgtga |
5075016 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 5148362 - 5148233
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| |||||||||||| ||||||||||| ||| |||||||||||||| |||| ||||||| |||| |
|
|
| T |
5148362 |
ctttatgcagaaattggaataaatgtcctactggagcgaagccttgtgactgttgatgatatgaatcggcttggaatgcatgatttgttgcgagacatgg |
5148263 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcaccaa |
130 |
Q |
| |
|
||||| ||| | || ||||||||||||| |
|
|
| T |
5148262 |
caagagaaatcatacgcgaggaatcaccaa |
5148233 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 5382262 - 5382419
Alignment:
| Q |
16 |
ggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttc |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | ||| ||||||||||| | ||||||||||||| |||| | | ||||||||||||| ||| ||| |
|
|
| T |
5382262 |
ggaataagtgtccttgttgagagaagccttgtaactgtcgatgataagaatacacttggaatgcatgatttgttaagggatatgggaagagaaatcattc |
5382361 |
T |
 |
| Q |
116 |
gtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgt |
173 |
Q |
| |
|
|||| ||||||||| | |||||| | ||||||||||| |||| || |||||||| |
|
|
| T |
5382362 |
gtgaaaaatcaccaaaggatcctgaggagcgtagcaggttatggtttcatgaggatgt |
5382419 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 5348974 - 5349104
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgc--atggtttgctgcgagatat |
98 |
Q |
| |
|
|||| ||| |||||||||||||| || ||||||| |||| ||||| | ||||||||||||||||| |||||||||| ||| |||| |||||||||| |
|
|
| T |
5348974 |
ctttttgctgaaattggaataagtatctttgttgatcgaagtcttgtcactgttgatgataagaacaaacttggaatgcatatgatttgttgcgagatat |
5349073 |
T |
 |
| Q |
99 |
gggaagaggaattgttcgtgaggaatcacca |
129 |
Q |
| |
|
|||||||| ||| |||||| | |||||||| |
|
|
| T |
5349074 |
gggaagagaaatcattcgtgggaaatcacca |
5349104 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 5277297 - 5277397
Alignment:
| Q |
6 |
tgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaaga |
105 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||| | || | |||||| |||| |||| ||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
5277297 |
tgcagaagatggaataagtgtccttgttgagcgaagcttagtaacggttgataataaaaacaagcttggaatgcataatttgttgcgggatatgggaaga |
5277396 |
T |
 |
| Q |
106 |
g |
106 |
Q |
| |
|
| |
|
|
| T |
5277397 |
g |
5277397 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 5446008 - 5446067
Alignment:
| Q |
320 |
tttggctgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcat |
379 |
Q |
| |
|
||||| ||| || |||||||||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
5446008 |
tttggttgtgaactttttgtgcttcatgacttctagctagtaacaactgattggtttcat |
5446067 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 5175470 - 5175570
Alignment:
| Q |
6 |
tgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaaga |
105 |
Q |
| |
|
||||||| ||||||||| ||||| |||||| ||||| | || | |||||| |||| |||| ||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
5175470 |
tgcagaagatggaataagtgtcctggttgagcgaagcttagtaacggttgataataaaaacaagcttggaatgcataatttgttgcgggatatgggaaga |
5175569 |
T |
 |
| Q |
106 |
g |
106 |
Q |
| |
|
| |
|
|
| T |
5175570 |
g |
5175570 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 5432020 - 5432111
Alignment:
| Q |
15 |
tggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagag |
106 |
Q |
| |
|
||||||||| |||||||||||| | ||| | || | |||||||| | |||| |||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
5432020 |
tggaataagagtccttgttgagcgtagcttagtatatattgatgatgataacaagcttggaatgcatgatttgttgcgggatatgggaagag |
5432111 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 22585720 - 22585446
Alignment:
| Q |
5 |
atgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22585720 |
atgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacaggcttggaatgcatgatttgctgcgagatatgggaag |
22585621 |
T |
 |
| Q |
105 |
aggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga |
204 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22585620 |
aggaattgttcttgaggaatcaccaaagagtcctgagaagcgtagcaggttgttgtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga |
22585521 |
T |
 |
| Q |
205 |
ctttg--tannnnnnnnnnnaaaatttggatttaaagcatttaaagcttaagaattt-aaaagaaacatttatag |
276 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
22585520 |
ctttgtataatttttttttttaaatttggatttaaagcatttaaagattaagaatttaaaaagaaacatttatag |
22585446 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 4322499 - 4322302
Alignment:
| Q |
7 |
gcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagag |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||||||||||||||||||||| | |
|
|
| T |
4322499 |
gcagaaattggaataagtgtccttgttgagagaagccttgtaacggttgatgataagaacaagcttggcatgcatgatttgctgcgagatatgggaaggg |
4322400 |
T |
 |
| Q |
107 |
gaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga |
204 |
Q |
| |
|
||| |||||||| ||||||||| | ||||||| ||||||| |||||||||| || || |||||| |||| ||||| ||| |||| ||||||||| |
|
|
| T |
4322399 |
aaatcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtttcatgatgatgtgcttgatgtattgtcagaacatactgtaaga |
4322302 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 4125834 - 4125640
Alignment:
| Q |
10 |
gaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaa |
109 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| | |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| || |
|
|
| T |
4125834 |
gaaattggaataagtgtccttgttgaacgaagccttgtaacagttgatgataagaacaagcttggcatgcatgatttgctgcgagatatgggaagagaaa |
4125735 |
T |
 |
| Q |
110 |
ttgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga |
204 |
Q |
| |
|
| |||||||| ||||||||| | ||||||| ||||||| ||||||||||||| |||||||||||||| |||| ||| |||| || |||||| |
|
|
| T |
4125734 |
tcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtatcatgaggatgtgattgatatattgtcagaacatacggtaaga |
4125640 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 4351835 - 4352031
Alignment:
| Q |
8 |
cagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagagg |
107 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| | ||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
4351835 |
cagaaattggaataaaggttcttgttgagagaagccttgtaatcgttgatgataaaaacaagcttggcatgcatgatttgctgcgagatatgggaagaga |
4351934 |
T |
 |
| Q |
108 |
aattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga |
204 |
Q |
| |
|
||| |||||||| ||||||||| | ||||||| ||||||| |||||||||| || | ||||||| |||| ||||| |||||||| ||||||||| |
|
|
| T |
4351935 |
aatcattcgtgagaaatcaccaaaggagcctgaggaacgtagtaggttgtggtttcacggggatgtgcttgatgtattgtcaaaacatactgtaaga |
4352031 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 4334160 - 4334354
Alignment:
| Q |
10 |
gaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaa |
109 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| | || |||| |||||||| |||||| ||||||| |||||| |||||||||||||||| || |
|
|
| T |
4334160 |
gaaattggaataagtgtccttgttgagcgaagccttgtaacggtcgatggtaagaacaagcttggcatgcatgatttgcttcgagatatgggaagagaaa |
4334259 |
T |
 |
| Q |
110 |
ttgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga |
204 |
Q |
| |
|
| |||||||| ||||||||| | ||||||| ||||||| |||||||||| || ||||||||| |||| ||||| ||| |||| ||||||||| |
|
|
| T |
4334260 |
tcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtttcatgaggatgtgcttgatgtattgtcagaacatactgtaaga |
4334354 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 4359014 - 4359187
Alignment:
| Q |
6 |
tgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaaga |
105 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
4359014 |
tgcaggaattggaataagtgtccttgttgagagaagccttgtaacggttgatgataagaacaagcttggcatgcatgatttgctccgagatatgggaaga |
4359113 |
T |
 |
| Q |
106 |
ggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattga |
179 |
Q |
| |
|
| ||| |||||||| ||||||||| | ||||||| ||| ||| ||| |||||| || |||||||||||||| |
|
|
| T |
4359114 |
gaaatcattcgtgagaaatcaccaaaggagcctgaggaacatagtaggctgtggtttcatgaggatgtgattga |
4359187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 4343546 - 4343699
Alignment:
| Q |
7 |
gcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagag |
106 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
4343546 |
gcagaaatcggcataagtgtccttgttgagagaagccttgtaatggttgatgataagaacaagcttggcatgcatgatttgctgcgagatatgggaagag |
4343645 |
T |
 |
| Q |
107 |
gaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggt |
160 |
Q |
| |
|
||| |||||||| |||| |||| | ||||||| ||| ||| |||||||||| |
|
|
| T |
4343646 |
aaatcattcgtgagaaatcgccaaaggagcctgaggaacatagtaggttgtggt |
4343699 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4135185 - 4135080
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| ||| ||||| |||||||| |||||||||||| |||||||||| | | |||||||||| |||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
4135185 |
ctttttgctgaaatcggaataagtgtccttgttgagcgaagccttgtaactattgatgataaaaacaagcttggaatgcatgatttgctacgagatatgg |
4135086 |
T |
 |
| Q |
101 |
gaagag |
106 |
Q |
| |
|
|||||| |
|
|
| T |
4135085 |
gaagag |
4135080 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25568593 - 25568688
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatg-ataagaacatgcttggaatgcatggtttgctgcgaga |
95 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||| | |||||| || ||||| ||||||||||||| |||| ||||||| |
|
|
| T |
25568593 |
ctttatgcagaaattggaataaacgtccttgttgagcgaagccttgtgactattgatgaattggaacagacttggaatgcatgatttgttgcgaga |
25568688 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 6649656 - 6649760
Alignment:
| Q |
25 |
gtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtgaggaat |
124 |
Q |
| |
|
|||||||| |||||||||||||| | |||||| ||| ||||| |||| ||||||||| |||| | |||| |||||| || ||| ||| |||||||| |
|
|
| T |
6649656 |
gtccttgtagagagaagccttgtaactgttgacaataggaacaagcttagaatgcatgatttgttaagagacatgggacgacaaatagtttatgaggaat |
6649755 |
T |
 |
| Q |
125 |
cacca |
129 |
Q |
| |
|
||||| |
|
|
| T |
6649756 |
cacca |
6649760 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 36215295 - 36215092
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||| ||||||||||||| |||| || ||||| ||| |||||||||| | ||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
36215295 |
ctttttgcagaaattggagtaagtgttcttgtagagcgaagccttgtaactgttgatgataggaacaggcttggaatgcatgatttgctgcgagatatgg |
36215196 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgt |
200 |
Q |
| |
|
|||||| || |||||||| ||||||||| | || |||| | |||||||||||||||| | |||| ||| ||| ||||||||| |||||||||| |
|
|
| T |
36215195 |
gaagagagatcattcgtgagaaatcaccaaaggagcttgaggagcgtagcaggttgtggtttaataaggacgtggctgatgtattatcagaacaaactgt |
36215096 |
T |
 |
| Q |
201 |
aaga |
204 |
Q |
| |
|
|||| |
|
|
| T |
36215095 |
aaga |
36215092 |
T |
 |
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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 8876402 - 8876563
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||||| | |||||||||||||| || |||||||| |||||||||| | | ||||| | ||| |||||||||||||||| |||| || |||||||| |
|
|
| T |
8876402 |
ctttatcctgaaattggaataagtgttcttgttgaacgaagccttgtaaccatggatgaaaggaatatgcttggaatgcatgatttgttgacagatatgg |
8876501 |
T |
 |
| Q |
101 |
gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtat |
162 |
Q |
| |
|
|||||| ||| |||||||| ||||||||| | |||||| | |||||||||||||||||| |
|
|
| T |
8876502 |
gaagagaaatcattcgtgagaaatcaccaaaggatcctgaggagcgtagcaggttgtggtat |
8876563 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 15801829 - 15801884
Alignment:
| Q |
64 |
aacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtga |
119 |
Q |
| |
|
|||| |||||||||||||| | |||| ||||| |||||||||| |||||||||||| |
|
|
| T |
15801829 |
aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtga |
15801884 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 10056 - 9898
Alignment:
| Q |
16 |
ggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttc |
115 |
Q |
| |
|
|||||||| |||||||||||| |||||||| | | ||| ||||||||||| | ||||||||||||| ||| | |||||||||||||| | ||| ||| |
|
|
| T |
10056 |
ggaataagtgtccttgttgagcgaagccttctaactgtcgatgataagaatacacttggaatgcatgatttattacgagatatgggaagggaaatcattc |
9957 |
T |
 |
| Q |
116 |
gtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtg |
174 |
Q |
| |
|
|||| ||||||||||| |||||| | ||||| ||||| |||| || ||||||||| |
|
|
| T |
9956 |
gtgaaaaatcaccaagggatcctgaggaccgtagtaggttatggtttcaagaggatgtg |
9898 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7165962 - 7165847
Alignment:
| Q |
1 |
ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg |
100 |
Q |
| |
|
|||||||| || |||||||||| ||||| || ||| | |||||||||| |||| | || |||| |||||||||||||| |||||| |||| |||| |
|
|
| T |
7165962 |
ctttatgctgacattggaataacggtcctcgtagagcggagccttgtgaaaattgaaaagaataacaagcttggaatgcatgatttgcttagagacatgg |
7165863 |
T |
 |
| Q |
101 |
gaagaggaattgttcg |
116 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
7165862 |
gaagagaaattgttcg |
7165847 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 3363070 - 3363120
Alignment:
| Q |
69 |
gcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtga |
119 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||||| | |||||||||||| |
|
|
| T |
3363070 |
gcttggaatgcatgctttgctacgagacatgggaagggaaattgttcgtga |
3363120 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 3392813 - 3392763
Alignment:
| Q |
69 |
gcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtga |
119 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||||| | |||||||||||| |
|
|
| T |
3392813 |
gcttggaatgcatgatttgctacgagacatgggaagggaaattgttcgtga |
3392763 |
T |
 |
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