View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_42 (Length: 412)

Name: NF16177_low_42
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_42
NF16177_low_42
[»] chr6 (23 HSPs)
chr6 (1-400)||(5285144-5285548)
chr6 (5-400)||(5261147-5261545)
chr6 (1-204)||(5445676-5445879)
chr6 (1-204)||(5342293-5342496)
chr6 (6-189)||(5183167-5183350)
chr6 (1-204)||(5094640-5094843)
chr6 (1-125)||(5691390-5691514)
chr6 (10-204)||(5158701-5158895)
chr6 (1-129)||(5104147-5104275)
chr6 (1-204)||(5369059-5369262)
chr6 (1-128)||(5355892-5356019)
chr6 (1-160)||(5395642-5395801)
chr6 (1-204)||(5068274-5068477)
chr6 (1-128)||(5133181-5133308)
chr6 (1-204)||(5424352-5424555)
chr6 (1-119)||(5075016-5075134)
chr6 (1-130)||(5148233-5148362)
chr6 (16-173)||(5382262-5382419)
chr6 (1-129)||(5348974-5349104)
chr6 (6-106)||(5277297-5277397)
chr6 (320-379)||(5446008-5446067)
chr6 (6-106)||(5175470-5175570)
chr6 (15-106)||(5432020-5432111)
[»] chr2 (1 HSPs)
chr2 (5-276)||(22585446-22585720)
[»] chr4 (9 HSPs)
chr4 (7-204)||(4322302-4322499)
chr4 (10-204)||(4125640-4125834)
chr4 (8-204)||(4351835-4352031)
chr4 (10-204)||(4334160-4334354)
chr4 (6-179)||(4359014-4359187)
chr4 (7-160)||(4343546-4343699)
chr4 (1-106)||(4135080-4135185)
chr4 (1-95)||(25568593-25568688)
chr4 (25-129)||(6649656-6649760)
[»] chr7 (1 HSPs)
chr7 (1-204)||(36215092-36215295)
[»] chr5 (2 HSPs)
chr5 (1-162)||(8876402-8876563)
chr5 (64-119)||(15801829-15801884)
[»] scaffold0294 (1 HSPs)
scaffold0294 (16-174)||(9898-10056)
[»] chr8 (3 HSPs)
chr8 (1-116)||(7165847-7165962)
chr8 (69-119)||(3363070-3363120)
chr8 (69-119)||(3392763-3392813)


Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 5285548 - 5285144
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5285548 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 5285449  T
101 gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattat-caaaacaaactg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||| ||||||    
5285448 gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgatgtattataaaaaaaaaactg 5285349  T
200 taagactttgta----nnnnnnnnnnnaaaatttggatttaaagcatttaaagcttaagaatttaaaagaaacatttatagttgtcatcatccatttgtt 295  Q
    ||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5285348 taagactttgtataatgtttttatttttttttttggatttaaagcatttaaagcttaagaatttaaaagaaacatttatagttgtcatcatccatttgtt 5285249  T
296 ttgttgattatcatcaagaataattttggctgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcatggctagttttatatcc 395  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
5285248 ttgttgattatcatcgagaataattttgactgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcatggccagttttatattc 5285149  T
396 acctt 400  Q
    |||||    
5285148 acctt 5285144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 400
Target Start/End: Complemental strand, 5261545 - 5261147
Alignment:
5 atgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
5261545 atgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgttgcgagatatgggaag 5261446  T
105 aggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga 204  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||||||||||||||||||    
5261445 agaaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtgtgatcaggaggatgtgattgatgtattatcaaaacaaactgtaaga 5261346  T
205 ctttgt---annnnnnnnnnnaaaatttggatttaaagcatttaaagcttaagaatttaaaagaaacatttatagttgtcatcatccatttgttttgttg 301  Q
    ||| ||   |           ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
5261345 cttcgtataatttttttttttaaaatttggatttaaagcatttaaaacttaagaatttaaaagaaatatttatagtggtcagcatccatttgttttgttg 5261246  T
302 attatcatcaagaataattttggctgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcatggctagttttatatccacctt 400  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
5261245 attatcatcgaaaattattttggctgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcatggccagttttatattcacctt 5261147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5445676 - 5445879
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| |||||||||||||||||| ||||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||    
5445676 ctttctgcagaaattggaataagtgtccttgttgctcgaagccttgtgactgttgatgataagaacatgcttggaatgcatggtcagctgcgagatatgg 5445775  T
101 gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgt 200  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||| |||||||||    
5445776 gaagaggaatcgtttgtgaggaatcaccaaggaggcctgagaaacgtagtaggttgtgggatcaggaggatgtgattgatgtattatcaagacaaactgt 5445875  T
201 aaga 204  Q
    ||||    
5445876 aaga 5445879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5342293 - 5342496
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| |||||||||||||||||| || ||||||||| |||||||||| | ||||||    |||||||  ||||||||||| | |||||||||||||||||    
5342293 ctttttgcagaaattggaataagtgttcttgttgagcgaagccttgtaattgttgacagcaagaacaaacttggaatgcacgatttgctgcgagatatgg 5342392  T
101 gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgt 200  Q
    |||||| ||| ||||||||| ||||||||| |  || || | | |||||||||||||| | |  |||||||||| |||| ||||||||| ||||||| ||    
5342393 gaagagaaatcgttcgtgagaaatcaccaaaggagcttggggagcgtagcaggttgtgctttaaggaggatgtgcttgatgtattatcagaacaaaccgt 5342492  T
201 aaga 204  Q
    ||||    
5342493 aaga 5342496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 5183350 - 5183167
Alignment:
6 tgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaaga 105  Q
    ||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||| |||||  ||   |||||||| ||||||  ||||||||||||||    
5183350 tgcagaaattggagtaagtgtccttgttgagagaagccttgtaactgttgatgataggaacaaactgcaaatgcatgatttgctaagagatatgggaaga 5183251  T
106 ggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatca 189  Q
    | ||| ||||||||| | |||||||    ||||||| | |||||||||||||||| |    |||||||||||||||||||||||    
5183250 gaaatcgttcgtgagaagtcaccaaaagagcctgaggagcgtagcaggttgtggtttaacaaggatgtgattgacgtattatca 5183167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5094640 - 5094843
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||| ||||||||||||||  ||||||||||| | || ||||| | |||||||||||||||||  ||||||||||||| |||| ||||||||||||    
5094640 ctttttgctgaaattggaataagtatccttgttgagcgtagtcttgtaactgttgatgataagaacaaacttggaatgcatgatttgttgcgagatatgg 5094739  T
101 gaagaggaattgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactg 199  Q
    |||||| |||  |||||||| |||||||| |||| ||  ||| | ||| |||||||||||| ||  || |||||| || | ||||||||| |||||||||    
5094740 gaagagaaatcattcgtgagaaatcaccagagga-gctcgaggagcgttgcaggttgtggtttcatgatgatgtgcttcatgtattatcagaacaaactg 5094838  T
200 taaga 204  Q
    |||||    
5094839 taaga 5094843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 5691514 - 5691390
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||||||||| |||||||||||  |||||||| ||| |||||||||||| ||||||||||| ||||| |||| ||||||||| |||| ||||||||||||    
5691514 ctttatgcaggaattggaataaatgtccttgtggagcgaagccttgtgactgttgatgataggaacaggcttagaatgcatgatttgttgcgagatatgg 5691415  T
101 gaagaggaattgttcgtgaggaatc 125  Q
    |||||| ||| ||||||||| ||||    
5691414 gaagagaaatcgttcgtgagaaatc 5691390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 5158895 - 5158701
Alignment:
10 gaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaa 109  Q
    ||||||||||||||| ||||||||||| | || ||||| | |||||||| ||||||||  ||||||||||||| |||| |||||||||||||||||| ||    
5158895 gaaattggaataagcatccttgttgagcgtagtcttgttactgttgatggtaagaacaaacttggaatgcatgatttgttgcgagatatgggaagagaaa 5158796  T
110 ttgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga 204  Q
    |  |||||||| |||||||| |||||  | ||| | ||| |||||||||||| ||  || |||||| || | ||||||||| ||||||||||||||    
5158795 tcattcgtgagaaatcaccagaggagatc-gaggagcgttgcaggttgtggtttcatgacgatgtgcttcatgtattatcagaacaaactgtaaga 5158701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 5104275 - 5104147
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||||||||||||||||||  ||||||||||| |||| ||| | | |||||||||||||||||  ||||||||||||| |||| ||||||||||||    
5104275 ctttttgcagaaattggaataagtatccttgttgagcgaagtcttataactgttgatgataagaacaaacttggaatgcatgatttgttgcgagatatgg 5104176  T
101 gaagaggaattgttcgtgaggaatcacca 129  Q
    |||||| |||  |||||||| ||||||||    
5104175 gaagagaaatcattcgtgagaaatcacca 5104147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5369059 - 5369262
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||| ||||||||||||||  ||||||||||| |||| ||||| | |||||||||||||||||  ||||||||||||| |||| ||||||||||||    
5369059 ctttttgctgaaattggaataagtatccttgttgagcgaagtcttgtcactgttgatgataagaacaaacttggaatgcatgatttgttgcgagatatgg 5369158  T
101 gaagaggaattgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactg 199  Q
    |||||| |||  |||||| | |||||||| | || ||  ||| | ||| |||||||||||| ||  ||||||||| || | ||||||||| | |||||||    
5369159 gaagagaaatcattcgtgggaaatcaccagaaga-gctcgaggagcgttgcaggttgtggtttcatgaggatgtgcttcatgtattatcagatcaaactg 5369257  T
200 taaga 204  Q
    |||||    
5369258 taaga 5369262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5356019 - 5355892
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||||||| ||||||||||||||  | ||||||||| |||||||||| | ||||||||||||||| | |||| ||||||||| |||||| ||||||||||    
5356019 ctttatgctgaaattggaataagtattcttgttgagcgaagccttgtaactgttgatgataagaataggcttagaatgcatgatttgctacgagatatgg 5355920  T
101 gaagaggaattgttcgtgaggaatcacc 128  Q
    |||||| | | ||||||||| |||||||    
5355919 gaagagaagtcgttcgtgagaaatcacc 5355892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 5395642 - 5395801
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||||||||||||| |||| |||||||||||| |||||||||| | ||||||||||| |||||  |||| |||||||| ||||||  |||||||||    
5395642 ctttttgcagaaattggagtaagtgtccttgttgagcgaagccttgtaactgttgatgataggaacagacttgcaatgcatgatttgctaagagatatgg 5395741  T
101 gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggt 160  Q
    |||||| ||| ||||||||| | |||||||    ||| ||| | ||||||||||||||||    
5395742 gaagagaaatcgttcgtgagaagtcaccaaaagagcccgaggagcgtagcaggttgtggt 5395801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5068477 - 5068274
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||| ||||||||||||||  ||||||||||| |||| || || | ||||||| | |||||||  ||||||||||||| |||| ||||||||||||    
5068477 ctttttgctgaaattggaataagtatccttgttgagcgaagtctggttattgttgataaaaagaacaaacttggaatgcatgatttgttgcgagatatgg 5068378  T
101 gaagaggaattgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactg 199  Q
    |||||| ||| ||||||| | |||||||| | || ||  ||| | ||| |||||||||||| || |||||||| | || | ||||||||| |||||||||    
5068377 gaagagaaatcgttcgtgggaaatcaccagaaga-gctcgaggagcgttgcaggttgtggtttcaggaggatgcgcttcaagtattatcagaacaaactg 5068279  T
200 taaga 204  Q
    |||||    
5068278 taaga 5068274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5133308 - 5133181
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||| ||||||||||||||  | ||| |||||||||||||||| | |||||||| |||| ||| |||||||||||||| |||| || |||||||||    
5133308 ctttttgccgaaattggaataagtattcttattgagagaagccttgtaactgttgatgctaaggacaggcttggaatgcatgatttgttgagagatatgg 5133209  T
101 gaagaggaattgttcgtgaggaatcacc 128  Q
    |||||| |||| ||||||| ||||||||    
5133208 gaagagaaattattcgtgaagaatcacc 5133181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5424352 - 5424555
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||| ||||||||||||||  ||||||||||| | || ||||| | |||||||||||| ||||  ||||||||||||| |||| ||||||||||||    
5424352 ctttttgctgaaattggaataagtatccttgttgagcggagtcttgtcactgttgatgataataacaaacttggaatgcatgatttgttgcgagatatgg 5424451  T
101 gaagaggaattgttcgtgaggaatcacca-aggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactg 199  Q
    |||||| |||  |||||| | |||||||| | || ||  ||| | ||| |||||||||||| ||  ||||||||| || | ||||||||| | |||||||    
5424452 gaagagaaatcattcgtgggaaatcaccagaaga-gctcgaggagcgttgcaggttgtggtttcatgaggatgtgcttcatgtattatcagatcaaactg 5424550  T
200 taaga 204  Q
    |||||    
5424551 taaga 5424555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5075134 - 5075016
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||| ||||||||| |||| || ||||||||| |||||||||| | ||| ||||||| ||||| |||||||||||||| ||||||||| |||||||    
5075134 ctttttgctgaaattggagtaagtgtacttgttgagcgaagccttgtaactgtcgatgataggaacaagcttggaatgcatgatttgctgcgtgatatgg 5075035  T
101 gaagaggaattgttcgtga 119  Q
    |||||| |||  |||||||    
5075034 gaagagaaatcattcgtga 5075016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 5148362 - 5148233
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    ||||||||||||||||||||||  |||||  | ||| |||||||||||| ||||||||||| |||   |||||||||||||| |||| ||||||| ||||    
5148362 ctttatgcagaaattggaataaatgtcctactggagcgaagccttgtgactgttgatgatatgaatcggcttggaatgcatgatttgttgcgagacatgg 5148263  T
101 gaagaggaattgttcgtgaggaatcaccaa 130  Q
     ||||| |||  | || |||||||||||||    
5148262 caagagaaatcatacgcgaggaatcaccaa 5148233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 5382262 - 5382419
Alignment:
16 ggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttc 115  Q
    |||||||| ||||||||||||||||||||||| | ||| ||||||||||| |  ||||||||||||| |||| |  | ||||||||||||| |||  |||    
5382262 ggaataagtgtccttgttgagagaagccttgtaactgtcgatgataagaatacacttggaatgcatgatttgttaagggatatgggaagagaaatcattc 5382361  T
116 gtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgt 173  Q
    ||||  ||||||||| |   |||||| | ||||||||||| |||| ||  ||||||||    
5382362 gtgaaaaatcaccaaaggatcctgaggagcgtagcaggttatggtttcatgaggatgt 5382419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 5348974 - 5349104
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgc--atggtttgctgcgagatat 98  Q
    |||| ||| ||||||||||||||  || |||||||  |||| ||||| | |||||||||||||||||  ||||||||||  ||| |||| ||||||||||    
5348974 ctttttgctgaaattggaataagtatctttgttgatcgaagtcttgtcactgttgatgataagaacaaacttggaatgcatatgatttgttgcgagatat 5349073  T
99 gggaagaggaattgttcgtgaggaatcacca 129  Q
    |||||||| |||  |||||| | ||||||||    
5349074 gggaagagaaatcattcgtgggaaatcacca 5349104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 5277297 - 5277397
Alignment:
6 tgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaaga 105  Q
    |||||||  ||||||||| |||||||||||| ||||| | || |  |||||| |||| |||| |||||||||||||  |||| |||| ||||||||||||    
5277297 tgcagaagatggaataagtgtccttgttgagcgaagcttagtaacggttgataataaaaacaagcttggaatgcataatttgttgcgggatatgggaaga 5277396  T
106 g 106  Q
    |    
5277397 g 5277397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 5446008 - 5446067
Alignment:
320 tttggctgttaattttttgtgcttcataacttctagctagtaacgaatgattggtttcat 379  Q
    ||||| ||| || |||||||||||||| |||||||||||||||| | |||||||||||||    
5446008 tttggttgtgaactttttgtgcttcatgacttctagctagtaacaactgattggtttcat 5446067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 5175470 - 5175570
Alignment:
6 tgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaaga 105  Q
    |||||||  ||||||||| ||||| |||||| ||||| | || |  |||||| |||| |||| |||||||||||||  |||| |||| ||||||||||||    
5175470 tgcagaagatggaataagtgtcctggttgagcgaagcttagtaacggttgataataaaaacaagcttggaatgcataatttgttgcgggatatgggaaga 5175569  T
106 g 106  Q
    |    
5175570 g 5175570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 5432020 - 5432111
Alignment:
15 tggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagag 106  Q
    ||||||||| |||||||||||| | ||| | ||   | |||||||| | |||| |||||||||||||| |||| |||| |||||||||||||    
5432020 tggaataagagtccttgttgagcgtagcttagtatatattgatgatgataacaagcttggaatgcatgatttgttgcgggatatgggaagag 5432111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 22585720 - 22585446
Alignment:
5 atgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
22585720 atgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacaggcttggaatgcatgatttgctgcgagatatgggaag 22585621  T
105 aggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga 204  Q
    ||||||||||| |||||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
22585620 aggaattgttcttgaggaatcaccaaagagtcctgagaagcgtagcaggttgttgtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga 22585521  T
205 ctttg--tannnnnnnnnnnaaaatttggatttaaagcatttaaagcttaagaattt-aaaagaaacatttatag 276  Q
    |||||  ||            ||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
22585520 ctttgtataatttttttttttaaatttggatttaaagcatttaaagattaagaatttaaaaagaaacatttatag 22585446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 4322499 - 4322302
Alignment:
7 gcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagag 106  Q
    ||||||||||||||||| ||||||||||||||||||||||| |  |||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |    
4322499 gcagaaattggaataagtgtccttgttgagagaagccttgtaacggttgatgataagaacaagcttggcatgcatgatttgctgcgagatatgggaaggg 4322400  T
107 gaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga 204  Q
     |||  |||||||| ||||||||| |  ||||||| ||||||| |||||||||| ||  || |||||| |||| ||||| ||| |||| |||||||||    
4322399 aaatcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtttcatgatgatgtgcttgatgtattgtcagaacatactgtaaga 4322302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 4125834 - 4125640
Alignment:
10 gaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaa 109  Q
    |||||||||||||| |||||||||||  |||||||||| |  |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||    
4125834 gaaattggaataagtgtccttgttgaacgaagccttgtaacagttgatgataagaacaagcttggcatgcatgatttgctgcgagatatgggaagagaaa 4125735  T
110 ttgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga 204  Q
    |  |||||||| ||||||||| |  ||||||| ||||||| |||||||||||||  ||||||||||||||  |||| ||| |||| || ||||||    
4125734 tcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtatcatgaggatgtgattgatatattgtcagaacatacggtaaga 4125640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 4351835 - 4352031
Alignment:
8 cagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagagg 107  Q
    |||||||||||||||  || |||||||||||||||||||| |  ||||||||||| |||| |||||| ||||||| |||||||||||||||||||||||     
4351835 cagaaattggaataaaggttcttgttgagagaagccttgtaatcgttgatgataaaaacaagcttggcatgcatgatttgctgcgagatatgggaagaga 4351934  T
108 aattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga 204  Q
    |||  |||||||| ||||||||| |  ||||||| ||||||| |||||||||| ||  | ||||||| |||| ||||| |||||||| |||||||||    
4351935 aatcattcgtgagaaatcaccaaaggagcctgaggaacgtagtaggttgtggtttcacggggatgtgcttgatgtattgtcaaaacatactgtaaga 4352031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 4334160 - 4334354
Alignment:
10 gaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaa 109  Q
    |||||||||||||| |||||||||||| |||||||||| |  || |||| |||||||| |||||| ||||||| |||||| |||||||||||||||| ||    
4334160 gaaattggaataagtgtccttgttgagcgaagccttgtaacggtcgatggtaagaacaagcttggcatgcatgatttgcttcgagatatgggaagagaaa 4334259  T
110 ttgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgtaaga 204  Q
    |  |||||||| ||||||||| |  ||||||| ||||||| |||||||||| ||  ||||||||| |||| ||||| ||| |||| |||||||||    
4334260 tcattcgtgagaaatcaccaatggagcctgaggaacgtagtaggttgtggtttcatgaggatgtgcttgatgtattgtcagaacatactgtaaga 4334354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 4359014 - 4359187
Alignment:
6 tgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaaga 105  Q
    ||||| |||||||||||| ||||||||||||||||||||||| |  |||||||||||||||| |||||| ||||||| |||||| |||||||||||||||    
4359014 tgcaggaattggaataagtgtccttgttgagagaagccttgtaacggttgatgataagaacaagcttggcatgcatgatttgctccgagatatgggaaga 4359113  T
106 ggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattga 179  Q
    | |||  |||||||| ||||||||| |  ||||||| ||| ||| ||| |||||| ||  ||||||||||||||    
4359114 gaaatcattcgtgagaaatcaccaaaggagcctgaggaacatagtaggctgtggtttcatgaggatgtgattga 4359187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 4343546 - 4343699
Alignment:
7 gcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagag 106  Q
    |||||||| || ||||| ||||||||||||||||||||||| |  |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||    
4343546 gcagaaatcggcataagtgtccttgttgagagaagccttgtaatggttgatgataagaacaagcttggcatgcatgatttgctgcgagatatgggaagag 4343645  T
107 gaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggt 160  Q
     |||  |||||||| |||| |||| |  ||||||| ||| ||| ||||||||||    
4343646 aaatcattcgtgagaaatcgccaaaggagcctgaggaacatagtaggttgtggt 4343699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4135185 - 4135080
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||| ||||| |||||||| |||||||||||| |||||||||| | | |||||||||| |||| |||||||||||||| |||||| ||||||||||    
4135185 ctttttgctgaaatcggaataagtgtccttgttgagcgaagccttgtaactattgatgataaaaacaagcttggaatgcatgatttgctacgagatatgg 4135086  T
101 gaagag 106  Q
    ||||||    
4135085 gaagag 4135080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 25568593 - 25568688
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatg-ataagaacatgcttggaatgcatggtttgctgcgaga 95  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| | |||||| ||  |||||  ||||||||||||| |||| |||||||    
25568593 ctttatgcagaaattggaataaacgtccttgttgagcgaagccttgtgactattgatgaattggaacagacttggaatgcatgatttgttgcgaga 25568688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 6649656 - 6649760
Alignment:
25 gtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtgaggaat 124  Q
    |||||||| |||||||||||||| | ||||||  ||| ||||| |||| ||||||||| |||| |  |||| |||||| ||  ||| |||  ||||||||    
6649656 gtccttgtagagagaagccttgtaactgttgacaataggaacaagcttagaatgcatgatttgttaagagacatgggacgacaaatagtttatgaggaat 6649755  T
125 cacca 129  Q
    |||||    
6649756 cacca 6649760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 36215295 - 36215092
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||| ||||||||||||| |||| || ||||| ||| |||||||||| | ||||||||||| ||||| |||||||||||||| |||||||||||||||||    
36215295 ctttttgcagaaattggagtaagtgttcttgtagagcgaagccttgtaactgttgatgataggaacaggcttggaatgcatgatttgctgcgagatatgg 36215196  T
101 gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtgattgacgtattatcaaaacaaactgt 200  Q
    ||||||  ||  |||||||| ||||||||| |  || |||| | |||||||||||||||| |    |||| |||  ||| ||||||||| ||||||||||    
36215195 gaagagagatcattcgtgagaaatcaccaaaggagcttgaggagcgtagcaggttgtggtttaataaggacgtggctgatgtattatcagaacaaactgt 36215096  T
201 aaga 204  Q
    ||||    
36215095 aaga 36215092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 8876402 - 8876563
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||||| | |||||||||||||| || ||||||||  |||||||||| |   | ||||| | ||| |||||||||||||||| |||| ||  ||||||||    
8876402 ctttatcctgaaattggaataagtgttcttgttgaacgaagccttgtaaccatggatgaaaggaatatgcttggaatgcatgatttgttgacagatatgg 8876501  T
101 gaagaggaattgttcgtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtat 162  Q
    |||||| |||  |||||||| ||||||||| |   |||||| | ||||||||||||||||||    
8876502 gaagagaaatcattcgtgagaaatcaccaaaggatcctgaggagcgtagcaggttgtggtat 8876563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 15801829 - 15801884
Alignment:
64 aacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtga 119  Q
    |||| |||||||||||||| | |||| ||||| |||||||||| ||||||||||||    
15801829 aacaagcttggaatgcatgctctgctacgagacatgggaagagaaattgttcgtga 15801884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 10056 - 9898
Alignment:
16 ggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgggaagaggaattgttc 115  Q
    |||||||| |||||||||||| |||||||| | | ||| ||||||||||| |  ||||||||||||| |||  | |||||||||||||| | |||  |||    
10056 ggaataagtgtccttgttgagcgaagccttctaactgtcgatgataagaatacacttggaatgcatgatttattacgagatatgggaagggaaatcattc 9957  T
116 gtgaggaatcaccaaggaggcctgagaaacgtagcaggttgtggtatccggaggatgtg 174  Q
    ||||  |||||||||||   |||||| | ||||| ||||| |||| ||  |||||||||    
9956 gtgaaaaatcaccaagggatcctgaggaccgtagtaggttatggtttcaagaggatgtg 9898  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7165962 - 7165847
Alignment:
1 ctttatgcagaaattggaataagcgtccttgttgagagaagccttgtgagtgttgatgataagaacatgcttggaatgcatggtttgctgcgagatatgg 100  Q
    |||||||| || ||||||||||  ||||| || ||| | ||||||||||   ||||  | || |||| |||||||||||||| ||||||  |||| ||||    
7165962 ctttatgctgacattggaataacggtcctcgtagagcggagccttgtgaaaattgaaaagaataacaagcttggaatgcatgatttgcttagagacatgg 7165863  T
101 gaagaggaattgttcg 116  Q
    |||||| |||||||||    
7165862 gaagagaaattgttcg 7165847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 3363070 - 3363120
Alignment:
69 gcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtga 119  Q
    |||||||||||||| |||||| ||||| |||||||| | ||||||||||||    
3363070 gcttggaatgcatgctttgctacgagacatgggaagggaaattgttcgtga 3363120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 3392813 - 3392763
Alignment:
69 gcttggaatgcatggtttgctgcgagatatgggaagaggaattgttcgtga 119  Q
    |||||||||||||| |||||| ||||| |||||||| | ||||||||||||    
3392813 gcttggaatgcatgatttgctacgagacatgggaagggaaattgttcgtga 3392763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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