View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_44 (Length: 407)
Name: NF16177_low_44
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_44 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 2 - 407
Target Start/End: Original strand, 27801658 - 27802056
Alignment:
| Q |
2 |
tcagctggtgagaagtttcttctcctcattccttggaatatcctatggttcaacctcaaagatgaatgctgaatgtggtgtcaatgacatgtttgggtag |
101 |
Q |
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| T |
27801658 |
tcagctggtgagaagtttcttctcctcattccttggaatatcctatggttcaacctcaaagatgaatgctgaatgtggtgtcaatgacatgtttgggtag |
27801757 |
T |
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| Q |
102 |
ctccgttactgaccctggtaccattccttttgttgcatctgaagttaaactgtgtgatacagtgtgatagtgggtctagtgacagtatgccaatgaatta |
201 |
Q |
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| T |
27801758 |
ctccgttactgaccctggtaccattccttttgttgcatctgaagttaaac----------agtgtgatagtgggtctagtgacagtatgccaatgaatta |
27801847 |
T |
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| Q |
202 |
gccggaagaagggcgaattccggctctagccgcttaaaatccaaagaagcatcaatat---tagctgttaaaagtgcaaaagaaattgctactcttggtg |
298 |
Q |
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| T |
27801848 |
gccggaagaagggcgaattctggctctagccgcttaaaatccaaagaagcatcaatatccctagctgttaaaagtgcaaaagaaattgctactcttggtg |
27801947 |
T |
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| Q |
299 |
caagtctcttatgtgcaactggtgatttacaacttgtccagaaaatgtacaagaagactattactacctggctgctgtcgtcaacggatatgaaacctaa |
398 |
Q |
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| T |
27801948 |
caagtctcttatgtgcaactggtgatatacaacttgtccagaaaatgtacaaggagactattactacctggttgctgtcgtcaacggatatgaaacctaa |
27802047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 164 - 392
Target Start/End: Original strand, 27771020 - 27771253
Alignment:
| Q |
164 |
tgtgatagtgggtctagtgacag--tatgccaatgaattagccggaagaagggcgaattccggctctagccgcttaaaatccaaagaagcatcaatatt- |
260 |
Q |
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| T |
27771020 |
tgtgattgtgggtctagtgacagagtattccaatgaattggccggaataagggcgagttctggatctagccgtttaaaatccaatgaatcatcactattc |
27771119 |
T |
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| Q |
261 |
--agctgttaaaagtgcaaaagaaattgctactcttggtgcaagtctcttatgtgcaactggtgatttacaacttgtccagaaaatgtacaagaagacta |
358 |
Q |
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| T |
27771120 |
ctagctgctcaaagtgcaaaagaaatggcaacacttggcgcaagtctcttatgttcagctggtggtatacaactggtccaggaattgtacaaagagacta |
27771219 |
T |
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| Q |
359 |
ttactacctggctgctgtcgtcaacggatatgaa |
392 |
Q |
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| T |
27771220 |
ttcctacctggttgctgtcgtcaagggatgtgaa |
27771253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 27770824 - 27770960
Alignment:
| Q |
1 |
ctcagctggtgagaagtttcttctcctcattccttggaatatcctatggttcaacctcaaagatgaatgctgaatgtggtgtcaatgacatgtttgggta |
100 |
Q |
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| T |
27770824 |
ctcagctggtgagaagttgcttcacatcattccttggagtattgtctggttcaaactcaaagttgactgctgaatgtagtgtgaatggcctg-ttgggta |
27770922 |
T |
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| Q |
101 |
gctccgttactgaccctggtaccattccttttgttgca |
138 |
Q |
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| T |
27770923 |
gttccattactgcccctggtgcctttccttttgttgca |
27770960 |
T |
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