View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_low_46 (Length: 399)
Name: NF16177_low_46
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 3 - 397
Target Start/End: Original strand, 30969931 - 30970325
Alignment:
| Q |
3 |
atcatgaacataataaagcattgctaacaaattaaatacacttatagacagtttatcatgaaaaaacaaaattcattaatacattcagttcttagaatga |
102 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30969931 |
atcatgaacaaaataaagcattgctaacaaattaaatacacttatagacagtttatcatgaaaaaacaaaattcattaatacattcagttcttagaatga |
30970030 |
T |
|
| Q |
103 |
agtaattcaagcataaagttggattcacaaaacattgatcaaataactggtagtaaatgagagaagtaatacttttaaatccatataaaataatttgaca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30970031 |
agtaattcaagcataaagttggattcacaaaacattgatcaaataactggtagtaaatgagagaagtaatacttttaaatccatataaaataatttgaca |
30970130 |
T |
|
| Q |
203 |
cagatacacatctcaaataggtatgttcagtacatatcaatgagagtaataattacaacaacacaatattcttacctcgcccttatcaaagacaaatcca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30970131 |
cagatacacatctcaaataggtatgttcagtacatatcaatgagagtaataattacaacaacacaatattcttacctcgcccttatcaaagacaaatcca |
30970230 |
T |
|
| Q |
303 |
gaagtccacataactctatctcccgagccaaatcgatcagggtttaaagcatctttttgtctttttaaccaacactgaaatgaaagtaggtaatg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30970231 |
gaagtccacataactctatctcccgagccaaatcgatcagggtttaaagcatctttttgtctttttaaccaacactgaaatgaaagtaggtaatg |
30970325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University