View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_47 (Length: 395)
Name: NF16177_low_47
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 32552563 - 32552199
Alignment:
| Q |
13 |
aatatgatgatcaatagaaaacataaatactacattaacaaagatacaaattggcaataggataattgtaaaaagggaaatgacatgactaaatgattct |
112 |
Q |
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| T |
32552563 |
aatatgatgatcaatagaaaacataaatactacattaacaaatatacaaattggcaataggataattgtaaaaagggaaatgacatgactaaatgattct |
32552464 |
T |
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| Q |
113 |
atccagtccacaagttctaacttaattgataaaaatttcgaaattgttaaaccgaacatcatgatttaggtttaaattaaaccccaatctctccact--- |
209 |
Q |
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| T |
32552463 |
atccagtccacaagttctaacttaattgataaaaaatttgaaattgttaaaccgaacatcatgatctaggt-----ttaaaccccgatctctccacttat |
32552369 |
T |
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| Q |
210 |
-tgtgtgagtttcaataattatctgtcatttcgttatctaaaaaatatagaatattcataagtgcgtcttattttcaagtgtttaattaagctttcatac |
308 |
Q |
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| T |
32552368 |
atgtgtgagtttcaataattatctgtcatatcgttatctaaaaaatatagactattcataagtgcgtcttattttcaaatgtttaattaagctttcatac |
32552269 |
T |
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| Q |
309 |
cgattaataatcaaacatatattaatcatatttacctcttggaccatctcgtcgagtaccatgcctagtg |
378 |
Q |
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| T |
32552268 |
cgattaattatcaaacatatattaatcatatttacctcttggaccatctcgtcgagtaccatgcctagtg |
32552199 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 27878351 - 27878318
Alignment:
| Q |
336 |
atatttacctcttggaccatctcgtcgagtacca |
369 |
Q |
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| T |
27878351 |
atatttacctcttggaccatctcgttgagtacca |
27878318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 31078591 - 31078547
Alignment:
| Q |
118 |
gtccacaagttctaacttaattgataaaaatttcgaaattgttaa |
162 |
Q |
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|||||||| | ||||||||| |||||||||| ||||||||||||| |
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| T |
31078591 |
gtccacaactcctaacttaactgataaaaatatcgaaattgttaa |
31078547 |
T |
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