View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_49 (Length: 387)
Name: NF16177_low_49
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 88 - 372
Target Start/End: Complemental strand, 42154125 - 42153842
Alignment:
| Q |
88 |
gtaaaatcatggaaccaaaaaacttgtttttgaaataggaggacacaaacttattttctgnnnnnnnttaaaattacatttatgcctaatataaaagatc |
187 |
Q |
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| T |
42154125 |
gtaaaatcatggaaccaaaaaacttgtttttgaaataggaggacataaacttattttctgaaaaaa-tcaaaattacatttatgcctaatataaaagatc |
42154027 |
T |
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| Q |
188 |
aaaatgacacaatgatttaaaatttgatctaagcaaaatataattttcaatactttgtttcgttaattactttttagaagtcttgaacgcacaatccagc |
287 |
Q |
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| T |
42154026 |
aaaatgacacaatgatttaaaatttgatctaagcaaaatataatttttaatactttgtttcgttaattactttttagaagtcttgaacgcacaatccagc |
42153927 |
T |
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| Q |
288 |
tcctcaaacacgatttcatgatgtttgggtgtccttcatctcgccactacgatcatacatttctttttcataattgatcatatgt |
372 |
Q |
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| T |
42153926 |
tcctcaaacacgatttcatgatgtttgggtgtccttcatctcgccactgcgatcatacgtttctttttcataattgatcatatgt |
42153842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 42293955 - 42294044
Alignment:
| Q |
186 |
tcaaaatgacacaatgatttaaaatttgatctaagcaaaatataattttcaatactttgtttcgttaattactttttagaagtcttgaacg |
276 |
Q |
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| T |
42293955 |
tcaaaacgacacaatggtttaaaatttgatccaagcaaaatttaattttctttac-ttgtttcattaattacttttcagaagtgttgaacg |
42294044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 42293889 - 42293947
Alignment:
| Q |
88 |
gtaaaatcatggaaccaaaaaacttgtttttgaaataggaggacacaaacttattttct |
146 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
42293889 |
gtaaaatagtggaaccaaaaaacttgtttttaaaataggaggacataaacttattttct |
42293947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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