View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_5 (Length: 630)
Name: NF16177_low_5
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 630
Target Start/End: Complemental strand, 35073395 - 35072786
Alignment:
| Q |
15 |
atgaaacagtaaccaattgggtaaggtaatatacttatcttggtgaagtttggtgtgtgtgagcttaaataaatcgtctccttcggcgctcaaactcaaa |
114 |
Q |
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| T |
35073395 |
atgaaacagtaaccaattcggtaaggtaatatacttatcttggtgaagtttggtgtgtgtgagcttaaataaatcgtctccttcggcgctcaaactcaaa |
35073296 |
T |
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| Q |
115 |
tctaaacagaagagattagaaaaaaggttannnnnnnnnnnnnnnaggtggtgtgtgaaattatgaatgtttattttcatgcttgcttcgttaacacgta |
214 |
Q |
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| T |
35073295 |
tctaaacagaagagattagaaaaaaggttatttttatttttttgtaggtggtgtatgaaattatgaatgtttattttcatgcttgcttcgttaacacgta |
35073196 |
T |
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| Q |
215 |
tcacgtgttatgatattgacacgtggagatcaaacaaggttttagttctatatgacacgtgtacgcttgtaggttgttatgcagtcattacctatttttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073195 |
tcacgtgttatgatattgacacgtggagatcaaacaaggtttaa-ttctatatgacacgtgtacgcttgtaggttgttatgcagtcattacctatttttg |
35073097 |
T |
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| Q |
315 |
tttctagaaactagaactacatctagaacggttgattaaattttagagaaaataaaatttggatggaccatggatatgatatgagggaagtgctactagc |
414 |
Q |
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| T |
35073096 |
tttctagaaacaagaactacatctagaacggttgattaaattttagagaaaataaaatttggatggaccatggatatga-----gggaagtgctactagc |
35073002 |
T |
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| Q |
415 |
ttggtcctagggtgttcatcaacggaaaaatcaatcaataaatatcatagctggttgaaaattattgattatgctgcatcaaccacgaatttggaccaca |
514 |
Q |
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|||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073001 |
ttgggcctaaggtgttcatcaacggcaaaatcaatcaataaatatcatagctggttgaaaattattgattatgctgcatcaaccacgaatttggaccaca |
35072902 |
T |
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| Q |
515 |
taattcacttcatttacatcaattaattgtaacaattaagatctttcttaggggaatttattaatgatagatatgcttaagtggaagagaaaaatatgta |
614 |
Q |
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| T |
35072901 |
taattcacttgatttacatcaattaattgtaacaattaagatatttcttaggggaatttattaatgatagatatgcttaagtggaagagaaaaatatgta |
35072802 |
T |
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| Q |
615 |
agcatggtatagtaca |
630 |
Q |
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| T |
35072801 |
agcatggtatagtaca |
35072786 |
T |
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