View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_50 (Length: 383)

Name: NF16177_low_50
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_50
NF16177_low_50
[»] chr7 (3 HSPs)
chr7 (17-312)||(39645664-39645955)
chr7 (245-378)||(39645524-39645657)
chr7 (165-319)||(10027147-10027299)
[»] chr5 (4 HSPs)
chr5 (224-335)||(13040312-13040424)
chr5 (224-335)||(13110305-13110417)
chr5 (234-287)||(13416361-13416413)
chr5 (259-291)||(26449095-26449127)
[»] chr2 (5 HSPs)
chr2 (206-320)||(18666027-18666139)
chr2 (224-335)||(7671088-7671200)
chr2 (234-335)||(16567065-16567167)
chr2 (234-291)||(13995542-13995599)
chr2 (234-322)||(15262227-15262315)
[»] chr3 (2 HSPs)
chr3 (203-321)||(44762407-44762523)
chr3 (234-291)||(40700829-40700886)
[»] chr1 (4 HSPs)
chr1 (196-314)||(50004222-50004337)
chr1 (224-335)||(4952058-4952169)
chr1 (206-314)||(45791949-45792055)
chr1 (234-291)||(37346161-37346218)
[»] chr4 (2 HSPs)
chr4 (232-335)||(24155752-24155856)
chr4 (273-335)||(29539785-29539846)
[»] chr6 (1 HSPs)
chr6 (234-319)||(4043525-4043610)
[»] chr8 (2 HSPs)
chr8 (273-335)||(38503712-38503775)
chr8 (203-335)||(7548712-7548843)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 39645955 - 39645664
Alignment:
Q  17 aacctaagttcaaatatttacaacgtaggttggtccatacttgatatannnnnnnnnaaaggaagtccccataattgataagtaatcggcacaaaaccca 116  Q
    ||||||||||||||||||||||||||    ||||||||| ||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  39645955 aacctaagttcaaatatttacaacgt----tggtccataattgatatatatttttttaaaggaagtccccataattgataagtaatcggcacaaaaccca 39645860  T
Q  117 caagtatttgaatttgaacaactattattgacatta-------aaggccgtttaatgcacatgataggataaagatataatactgcatgaaattgaataa 209  Q
    ||||||||||||||||||||||||| ||||||||||       || || | || ||||| ||||||||||||||||||||||     |||||||| ||||    
T  39645859 caagtatttgaatttgaacaactatgattgacattattcattaaacgctgattgatgcatatgataggataaagatataata-----tgaaattggataa 39645765  T
Q  210 agataggaaatgatatataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatg 309  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39645764 agataggaaatgatatagata--agataaacattgatcctatcatttgtttggtgcacatatgataagaaacatgatatcatacatatcacagttaaatg 39645667  T

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Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 39645657 - 39645524
Alignment:
Q  245 atcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagttaccctgtaattaattatacaaagttat 344  Q
    |||||||||| || |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  39645657 atcctatcatatgtttggtgcacacatgataagaaatatgatatcatacatatcacaattaaatgacataattaccctgtaattaattatacaaagttat 39645558  T
Q  345 aaaataaatttgtcaatcgtcttcttcctatgtt 378  Q
    ||||||||||||||||||||||||||||||||||    
T  39645557 aaaataaatttgtcaatcgtcttcttcctatgtt 39645524  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 319
Target Start/End: Complemental strand, 10027299 - 10027147
Alignment:
Q  165 tgcacatgataggataaagatataatactgcatgaaattgaataaagataggaaatgatatataaacaagataaacattgatcctatcatttgattggtg 264  Q
    ||||||||||||||||||||||| |||    ||  ||||| |||| ||||||||| |||||  |  || |||||||||| ||| |||||  |  ||| ||    
T  10027299 tgcacatgataggataaagatatgatataatatacaattggataatgataggaaaggatattga--caggataaacatttatcatatcacatatttgatg 10027202  T
Q  265 cacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagttac 319  Q
    |||||||||||| ||| || |||||||| | |||| |||||||||||||| ||||    
T  10027201 cacatatgataacaaatataatatcatataaatcataattaaatgacaaaattac 10027147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 13040424 - 13040312
Alignment:
Q  224 atataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagtta-ccct 322  Q
    ||||| |||||||||||||| |||||||||| || ||| |||||| ||||||| |||||| |||||||| | ||||||||||||||||||| ||| |  |    
T  13040424 atatagacaagataaacatttatcctatcatatgtttgatgcacacatgataacaaacataatatcatatacatcacaattaaatgacaaaattatcatt 13040325  T
Q  323 gtaattaattata 335  Q
    |||||||||||||    
T  13040324 gtaattaattata 13040312  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 13110417 - 13110305
Alignment:
Q  224 atataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagtta-ccct 322  Q
    ||||| |||||||||||||| |||||||||| || ||| |||||| ||||||| |||||| |||||||| | ||||||||||||||||||| ||| |  |    
T  13110417 atatagacaagataaacatttatcctatcatatgtttgatgcacacatgataacaaacataatatcatatacatcacaattaaatgacaaaattatcatt 13110318  T
Q  323 gtaattaattata 335  Q
    |||||||||||||    
T  13110317 gtaattaattata 13110305  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 13416361 - 13416413
Alignment:
Q  234 gataaacattgatcctatcatttgattggtgcacatatgataagaaacatgata 287  Q
    |||||||||| ||||||| || || |||||||||||||||||||||| ||||||    
T  13416361 gataaacatt-atcctattatgtgtttggtgcacatatgataagaaagatgata 13416413  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 26449127 - 26449095
Alignment:
Q  259 ttggtgcacatatgataagaaacatgatatcat 291  Q
    |||||||||||||||||||||| ||||||||||    
T  26449127 ttggtgcacatatgataagaaagatgatatcat 26449095  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 320
Target Start/End: Complemental strand, 18666139 - 18666027
Alignment:
Q  206 ataaagataggaaatgatatataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaatta 305  Q
    |||| |||||||||||||||| |  || |||||||||| |||||||||  || ||| |||||| ||||||| |||||| |||||||| ||||||||||||    
T  18666139 ataatgataggaaatgatataga--caggataaacatttatcctatcacatgtttgatgcacacatgataacaaacataatatcatatatatcacaatta 18666042  T
Q  306 aatgacaaagttacc 320  Q
    ||||||||| |||||    
T  18666041 aatgacaaaattacc 18666027  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 7671200 - 7671088
Alignment:
Q  224 atataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagttaccc-t 322  Q
    ||||| ||| |||||||||| |||||||||  || ||| || ||| || |||| |||||| |||||||| ||||||||||||||||||||| |||||| |    
T  7671200 atatagacatgataaacatttatcctatcacatgtttgttgtacacattataacaaacataatatcatatatatcacaattaaatgacaaaattaccctt 7671101  T
Q  323 gtaattaattata 335  Q
     ||||||||||||    
T  7671100 ataattaattata 7671088  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 16567065 - 16567167
Alignment:
Q  234 gataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagttaccc-tgtaattaatt 332  Q
    |||||||||| ||| |||||  || ||| |||||| ||||||| |||||| |||||||| | |||| || ||||||||||| |||||| | |||||||||    
T  16567065 gataaacatttatcatatcacatgtttgatgcacacatgataacaaacataatatcatataaatcataactaaatgacaaaattacccttataattaatt 16567164  T
Q  333 ata 335  Q
    |||    
T  16567165 ata 16567167  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 13995542 - 13995599
Alignment:
Q  234 gataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcat 291  Q
    |||||||||| |||||||||| || ||| ||| || ||||||||||||||||||||||    
T  13995542 gataaacattaatcctatcatgtgtttgatgcgcacatgataagaaacatgatatcat 13995599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 15262227 - 15262315
Alignment:
Q  234 gataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagttaccct 322  Q
    |||||||||| |||  ||||| || ||| |||||| ||||||| ||| | ||||| ||| ||||||||||||||||| ||| |||||||    
T  15262227 gataaacatttatctcatcatgtgtttgatgcacacatgataacaaataggatatgatatatatcacaattaaatgataaaattaccct 15262315  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 44762407 - 44762523
Alignment:
Q  203 tgaataaagataggaaatgatatataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaa 302  Q
    ||||||| ||||||||| |||||| |  ||||||||||||   ||||||||| || ||| |||||| ||||||| ||||||||||| ||| |||| ||||    
T  44762407 tgaataaggataggaaaagatataga--caagataaacatctgtcctatcatatgtttgatgcacacatgataacaaacatgatattatatatattacaa 44762504  T
Q  303 ttaaatgacaaagttaccc 321  Q
    |||||||||||| ||||||    
T  44762505 ttaaatgacaaaattaccc 44762523  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 40700829 - 40700886
Alignment:
Q  234 gataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcat 291  Q
    |||||||||| |||||||||| || ||| |||||| ||||||| ||||||||||||||    
T  40700829 gataaacattaatcctatcatgtgtttgatgcacacatgataacaaacatgatatcat 40700886  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 50004222 - 50004337
Alignment:
Q  196 atgaaattgaataaagataggaaatgatatataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacat 295  Q
    ||||||||| | || ||||||||| ||||||  |||| ||||| |||| |||||||||| || |||||||||| ||||||| ||||||||||||||| ||    
T  50004222 atgaaattggagaaggataggaaaagatata--aacatgataa-catttatcctatcatatgtttggtgcacacatgataacaaacatgatatcatatat 50004318  T
Q  296 atcacaattaaatgacaaa 314  Q
    |||| ||||||| ||||||    
T  50004319 atcataattaaacgacaaa 50004337  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 4952169 - 4952058
Alignment:
Q  224 atataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagttaccc-t 322  Q
    ||||||||| ||||| |||| |||||||||| || |||||||||| || |||| ||||||||||||||| |||||| |||||||| |||||  ||||| |    
T  4952169 atataaacatgataa-catttatcctatcatatgtttggtgcacacataataacaaacatgatatcatatatatcataattaaataacaaaagtaccctt 4952071  T
Q  323 gtaattaattata 335  Q
     ||||||||||||    
T  4952070 ataattaattata 4952058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 45791949 - 45792055
Alignment:
Q  206 ataaagataggaaatgatatataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaatta 305  Q
    |||| |||||||||||||||| |  || |||||||||| |||||||||| || ||   | ||| ||||||| |||||| |||||||| |||||| |||||    
T  45791949 ataaggataggaaatgatataga--catgataaacatttatcctatcatatgtttatagtacacatgataacaaacataatatcatatatatcataatta 45792046  T
Q  306 aatgacaaa 314  Q
    |||||||||    
T  45792047 aatgacaaa 45792055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 37346161 - 37346218
Alignment:
Q  234 gataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcat 291  Q
    |||||||||| |||||||||| || ||| ||| || ||||||| ||||||||||||||    
T  37346161 gataaacattaatcctatcatgtgtttgatgcgcacatgataacaaacatgatatcat 37346218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 335
Target Start/End: Complemental strand, 24155856 - 24155752
Alignment:
Q  232 aagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagtta-ccctgtaattaa 330  Q
    |||||||||||| ||| |||||  || ||| |||||| | ||||| |||||| |||||||| ||||||| ||||||||||||| ||| || |||||||||    
T  24155856 aagataaacatttatcttatcacgtgtttgatgcacacacgataacaaacataatatcatatatatcactattaaatgacaaaattagccttgtaattaa 24155757  T
Q  331 ttata 335  Q
    |||||    
T  24155756 ttata 24155752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 29539846 - 29539785
Alignment:
Q  273 ataagaaacatgatatcatacatatcacaattaaatgacaaagttaccc-tgtaattaattata 335  Q
    |||| |||||| ||||||||  |||||||||||||||||||| |||||| | ||||||||||||    
T  29539846 ataacaaacataatatcata--tatcacaattaaatgacaaaattacccttataattaattata 29539785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 4043525 - 4043610
Alignment:
Q  234 gataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaattaaatgacaaagttac 319  Q
    |||||||||| |||| ||||| || ||| |||||| ||||||| ||| | ||||| ||| ||||||||||||||||||||| ||||    
T  4043525 gataaacatttatcccatcatgtgtttgatgcacacatgataataaataagatatgatatatatcacaattaaatgacaaaattac 4043610  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 38503712 - 38503775
Alignment:
Q  273 ataagaaacatgatatcatacatatcacaattaaatgacaaagttaccc-tgtaattaattata 335  Q
    |||| |||||| |||||||| ||||||||||||||||||| | |||||| || |||||||||||    
T  38503712 ataacaaacataatatcatatatatcacaattaaatgacataattacccttgcaattaattata 38503775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 335
Target Start/End: Complemental strand, 7548843 - 7548712
Alignment:
Q  203 tgaataaagataggaaatgatatataaacaagataaacattgatcctatcatttgattggtgcacatatgataagaaacatgatatcatacatatcacaa 302  Q
    ||||||| ||||||||| || ||||| ||| |||||||||| ||| |||||  || ||| |||||| ||||||  | |||| ||||||||   || | ||    
T  7548843 tgaataatgataggaaa-ga-atatagacaggataaacatttatcatatcacatgtttgatgcacacatgatagcagacataatatcatatcaataataa 7548746  T
Q  303 ttaaatgacaaagttaccc-tgtaattaattata 335  Q
    |||||||||||| |||||| ||||||||||||||    
T  7548745 ttaaatgacaaaattacccttgtaattaattata 7548712  T

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