View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_52 (Length: 379)
Name: NF16177_low_52
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_52 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 21 - 365
Target Start/End: Original strand, 32432 - 32776
Alignment:
| Q |
21 |
gtatactcaaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32432 |
gtatactcaaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaa |
32531 |
T |
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| Q |
121 |
tggatgggttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagttgtagacaacattgtctctctagtggctgctggatatatccc |
220 |
Q |
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| T |
32532 |
tggatgggttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagttgtagacaacattgtctctctagtggctgctggatatatccc |
32631 |
T |
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| Q |
221 |
tacttcccttgcatcaacttgggctatttaccttcttgctaagtatccaattgtgctaacaaaattgagggtatactaaaactttgtcttacattccatt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32632 |
tacttcccttgcatcaacttgggctatttaccttcttgctaagtatccaattgtgctaacaaaattgagggtatactaaaactttgtcttacattccatt |
32731 |
T |
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| Q |
321 |
catgattttaaattgcacttctacaacaacattgcgagaataatc |
365 |
Q |
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| T |
32732 |
catgattttaaattgcacttctacaacaacattgcgagaataatc |
32776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 24 - 279
Target Start/End: Original strand, 25225 - 25480
Alignment:
| Q |
24 |
tactcaaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaatgg |
123 |
Q |
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| T |
25225 |
tacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatgg |
25324 |
T |
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| Q |
124 |
atgggttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagttgtagacaacattgtctctctagtggctgctggatatatccctac |
223 |
Q |
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|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |
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| T |
25325 |
atgggttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagttgtagacaacattgtctctctagtagctgctggatatatatcaac |
25424 |
T |
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| Q |
224 |
ttcccttgcatcaacttgggctatttaccttcttgctaagtatccaattgtgctaa |
279 |
Q |
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| T |
25425 |
ttcccttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaa |
25480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 279
Target Start/End: Original strand, 39824 - 40077
Alignment:
| Q |
29 |
aaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaa---caagtgatctaatggat |
125 |
Q |
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||||||| |||||||||||||| | |||||||| ||||||||||| |||| |||||||| |||||||||||| ||| ||||||||||||||||| |
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| T |
39824 |
aaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtgaaaagtacaagtgatctaatggat |
39923 |
T |
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| Q |
126 |
gggttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagttgtagacaacattgtctctctagtggctgctggatatatccctactt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| |
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| T |
39924 |
gggttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagttgtagacaacattgtctctctagtgattggtggatatatgtctactt |
40023 |
T |
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| Q |
226 |
cccttgcatcaacttgggctatttaccttcttgctaagtatccaattgtgctaa |
279 |
Q |
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||||| |||| | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
40024 |
ccctttcatccatgtgggctatttaccttcttgctaagtatccaattgttctaa |
40077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 29 - 284
Target Start/End: Complemental strand, 4994 - 4739
Alignment:
| Q |
29 |
aaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaatggatggg |
128 |
Q |
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|||||||||||||||||||||| | || ||| | || ||||| ||| |||| || |||||| | || ||||||| ||||||| |||||||||||||||| |
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| T |
4994 |
aaaatttcagtgtagaagaaagcttgatgactttttctggattgaaatagataacagaaaaaataaagataaggtggaaacaattgatctaatggatggg |
4895 |
T |
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| Q |
129 |
ttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagttgtagacaacattgtctctctagtggctgctggatatatccctacttccc |
228 |
Q |
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||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||| |
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| T |
4894 |
ttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagttgtagacaacattgtctctctagtagctgctggatatctatcaacttccc |
4795 |
T |
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| Q |
229 |
ttgcatcaacttgggctatttaccttcttgctaagtatccaattgtgctaacaaaa |
284 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
4794 |
ttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaaaaaaa |
4739 |
T |
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