View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_54 (Length: 355)
Name: NF16177_low_54
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 1986102 - 1985788
Alignment:
| Q |
17 |
aacttcaagtagaaagtagttattaatatgtcaattgtacttttcttaaagttttaagctgtgcatgtaatttttatgaagtaatataatattgtctata |
116 |
Q |
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| T |
1986102 |
aacttcaagtagaaagtagttattaatatgtcaattgtacttttcttaaagttttaagctgtgcatgtaatttttatgaagtaatataatattgtctata |
1986003 |
T |
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| Q |
117 |
gatgcttcagacgtagaattacacgttcatgcatgcaatgatttataaaacgaaattattgatacgcacattgactaaagaattgttcgttgtgatgttt |
216 |
Q |
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| T |
1986002 |
catgcttcagacgtaggattacacgttcatgcatgcaatgatttataaaacgaaattattgatacgcacattgactaaagaattgttcgt---------- |
1985913 |
T |
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| Q |
217 |
atgaaagaactttagttatttcttgagattgcacgagggatacatacaatcgttgtaaaatgacgttgttggtatctagtttgagctgaaagttgttcct |
316 |
Q |
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| T |
1985912 |
---aaagaactttagttatttcttgagattgcacgagggatacatacaatcgttgtaaaatgacgttgttggtatctagtttgagctgaaagttgttcct |
1985816 |
T |
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| Q |
317 |
aatacgtcaaatgtacttttgtggagta |
344 |
Q |
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| T |
1985815 |
aatacgtcaaatgtacttttgtggagta |
1985788 |
T |
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