View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_low_55 (Length: 355)
Name: NF16177_low_55
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_55 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 46523582 - 46523921
Alignment:
| Q |
1 |
gatgcagatccaaaataagagaacttcaccctaacgtattcaataatcaatattactccctgacaaaatgcacaacatgtcattctatattaagttgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46523582 |
gatgcagatccaaaataagagaacttcaccctaacgtattcaataatcaatattactctctgacaaaatgcacaacatgtcattctatattaagttgagt |
46523681 |
T |
|
| Q |
101 |
catgcttgcttttagaattaactgatcaaccataaggtttcctcttttgatttagactctacttaaataaacaagttaatcaagtattaaatccacttgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46523682 |
catgcttgcttttagaattaactgatcaaccataaggtttcctcttttgatttagactctacttaaataaacatgttaatcaagtattaaatccacttgg |
46523781 |
T |
|
| Q |
201 |
gttggtttgatggtgttgtcttggaaccggcatgtgttcctttcaaggtgagagttcaattttcgcgtgccaatttcggtctgctagtttgacatcttcn |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46523782 |
gttggtttggtggtgttgtcttggaaccggcatgtgttcctttcaaggtgagagttcgattttcgcatgccaatttcggtctgctagtttgacatcttca |
46523881 |
T |
|
| Q |
301 |
nnnnnnntcttgatcaagtgcttatagtagaagataaact |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46523882 |
aaaaaaatcttgatcaagtgcttatagtagaagataaact |
46523921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 46531169 - 46531413
Alignment:
| Q |
1 |
gatgcagatccaaaataagagaacttcaccctaacgtattcaataatcaatattactccctgacaaaatgcacaacatgtcattctatattaagttgagt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
46531169 |
gatgcagacccaaaataagagaacttcaccctaacatattcaataatcaaaattactccctaacaaaatgcacaacatgtcaatctatattaaactgagt |
46531268 |
T |
|
| Q |
101 |
catgcttgcttttagaattaactgatcaa-ccataaggtttcctcttttgatttagactctacttaaataaacaagttaatcaagtattaaatccacttg |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
46531269 |
catgcttgcttctagaattaactgatcaacccataaggtttcctcttttgatttagactc--cttaaataaacaagtcaatcaagtgttaaacccacttg |
46531366 |
T |
|
| Q |
200 |
ggttggtttgatggtgttgtcttggaaccggcatgtgttcctttcaa |
246 |
Q |
| |
|
|||||| || |||||| ||||||| ||||| ||||||||| |||| |
|
|
| T |
46531367 |
ggttggcctggtggtgtcgtcttgggaccggagtgtgttcctctcaa |
46531413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 46323413 - 46323347
Alignment:
| Q |
95 |
ttgagtcatgcttgcttttagaattaactgatcaaccataaggtttcctcttttgatttagactcta |
161 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||||||||| |||| ||||||||||| ||||| |
|
|
| T |
46323413 |
ttgagtcatgctgggttttagaattaactgagcaaccataaatgttccgattttgatttaggctcta |
46323347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 7476224 - 7476106
Alignment:
| Q |
47 |
tcaatattactccctgacaaaatgcacaacatgtcattctatattaagt-tgagtcatgcttgcttttagaattaactgatcaaccataaggtttcctct |
145 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||| |||||||| || ||||||||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
7476224 |
tcaatattactccct-acaaaatgcaccacaaatcattatatattaaaactgtgtcatgcttgcttctagaat-----gatccaccataaggtttcctct |
7476131 |
T |
|
| Q |
146 |
tttgatttagactctacttaaataa |
170 |
Q |
| |
|
|||||| |||||| ||||||||||| |
|
|
| T |
7476130 |
tttgatctagactatacttaaataa |
7476106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 7492839 - 7492788
Alignment:
| Q |
123 |
tgatcaaccataaggtttcctcttttgatttagactctacttaaataaacaa |
174 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
7492839 |
tgatccactataaggtttcctcttttgatctagactatacttaaataaacaa |
7492788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 39842356 - 39842308
Alignment:
| Q |
180 |
tcaagtattaaatccacttgggttggtttgatggtgttgtcttggaacc |
228 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
39842356 |
tcaattataaaatccacttgggttggtctgatggtgttagcttggaacc |
39842308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University