View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_low_57 (Length: 352)
Name: NF16177_low_57
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_57 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 10520476 - 10520147
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||| || ||| | |||||||| |
|
|
| T |
10520476 |
gcgaggaagggaggcagttttctggcaatgtctcaagttgttcacaatcccaaaaacggagacgttggagagaggagaggtgacgaagcccttttccatc |
10520377 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10520376 |
aaaggacttcatttcagagagatccctgatagttagagtcacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcacccttt |
10520277 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
10520276 |
acaatacccaagtcggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcttaattgattgcaatttgg |
10520177 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10520176 |
gaggtagacaaactccttcacaaaatgaca |
10520147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 9980457 - 9980122
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
9980457 |
gcgaggaagggaggcagttttctggcaatgtctcaagttgttgacaaaacaaaaaacagagactttggagagaggagaggtgtcgcagcccatttccatc |
9980358 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9980357 |
aaaggacttcatttcagagagatcacagatacgtagatgcacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcacccttt |
9980258 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
||| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9980257 |
acaattctcaagtcgaaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgattgtaatttga |
9980158 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgacagctttt |
336 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
9980157 |
gaggtagacaaactccttcagaaaatgacaactttt |
9980122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 10263692 - 10263363
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
10263692 |
gcgaggaagggaggcagttttctggcaatgtctcaagttgatgacaaaagaaaaaacagagatattggagagaggagaggtgttgaagcccatttccatc |
10263593 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
|||||||||||||||| |||||| || | ||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10263592 |
aaaggacttcatttcagagagatcaaagacacgtagatacaaaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcacccttt |
10263493 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10263492 |
tgaatagtcaagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgttgttttttgggtagaaatctcaattgattgtaatttgg |
10263393 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
10263392 |
gaggtagacaaactccttcagaaaatgaca |
10263363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 10034994 - 10034665
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
10034994 |
gcgaggaagggaggcagttttctggcaatgtctcaagttgatgacaattccaaaaacagagagtttggagagaggagaggtgtcgaagcccatttccatc |
10034895 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
||||||||||||||||| || |||| |||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10034894 |
aaaggacttcatttcatcgaaatccctgatatatagatacacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttt |
10034795 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
| ||||||| ||| |||||||||||||||||||||||||||||||||||| || | || |||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
10034794 |
tcaatactcaagttggaaagtgctgtcaaatattggagaccccattccgttacagatggctttgttctttgggatgaaatcgtaattgattgtaatttgg |
10034695 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10034694 |
gaggtagacaaactccttcacaaaatgaca |
10034665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 10431119 - 10431454
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
10431119 |
gcgaggaagggaggcagttttctggcaatgtctcaagttgatcacaaaaccaaaaacagagagtttggagagaggagaggtgtcgcagcccatttccatc |
10431218 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10431219 |
aaaggacttcatttcagagagatcagtgatatatagatacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
10431318 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
||||| || | |||||||||||||||||||||||||||||||||||||||||||||| | | || || | | |||| | ||||||||||||||||| |
|
|
| T |
10431319 |
tgaattgtcaataaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggagttattcttcgagatgaaaaccaaattgattgtaatttgg |
10431418 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgacagctttt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
10431419 |
gaggtagacaaactccttcacaaaatgacagctttt |
10431454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 9841849 - 9841520
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| || ||||| | ||||| |||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
9841849 |
gcgaggaagggaggcagttttctggcaatgactcaagctgtggacaaaacgaaaaatcgagatattggagagaggagaggtgtcgaagcccatttccatc |
9841750 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9841749 |
aaaggacttcatttcagagagatccctgatatttagagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccctta |
9841650 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
| ||| | | ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9841649 |
tcaattcgcaagtaggaaagtgccgtcaaatattggtgaccccattccgtaaccggcggtgctgttttttgggtagaaatagcaattgattgtaatttgg |
9841550 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9841549 |
gaggtagacaaactccttcacaaaatgaca |
9841520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 336
Target Start/End: Complemental strand, 10583502 - 10583169
Alignment:
| Q |
3 |
gaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatcaa |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
10583502 |
gaggaagggaggcagttttctggcaatgtctcaagttgatgacaaatgaaaaaacagagatattggagagaggagaggtgtcgcagcccatttccatcaa |
10583403 |
T |
|
| Q |
103 |
aggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttg |
202 |
Q |
| |
|
|||||||||||||| ||||| | ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10583402 |
aggacttcatttcagagagattccagatatatagatacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcatcctttcc |
10583303 |
T |
|
| Q |
203 |
aatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttggga |
302 |
Q |
| |
|
||||||| || ||||| ||||| | || || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |
|
|
| T |
10583302 |
aatactccagcttgaaagagctgttagatctttgagaccccattccgtaaccggcggtgctgttttttgggtaaaaatcacaattgatcgtaatttgaga |
10583203 |
T |
|
| Q |
303 |
ggtagacaaactccttcacaaaatgacagctttt |
336 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| |
|
|
| T |
10583202 |
ggtagacaaactccttcagaaaatgacaactttt |
10583169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 10129913 - 10129584
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
10129913 |
gcgaggaagggaggcagttttctggcaatgtctcaagttgatgacaattccaaaagaagagatgttggagagagaagaggtgtcgaagcccatttccatc |
10129814 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
||||||||||||||||| || |||| |||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10129813 |
aaaggacttcatttcatcgaaatccctgatatatagatacacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttt |
10129714 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
||||||| | ||||| || ||||||| ||| ||||||||||| || || |||||||||||| ||| || ||| |||||||||||||||||| |
|
|
| T |
10129713 |
ccaatactcaatcttgaaagagcggtcaaatcttgaagaccccattctgtcacaggcggtgctgttcttttggactgtatctcaattgattgtaatttgg |
10129614 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10129613 |
gaggtagacaaactccttcacaaaatgaca |
10129584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 336
Target Start/End: Complemental strand, 9852728 - 9852395
Alignment:
| Q |
3 |
gaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatcaa |
102 |
Q |
| |
|
|||||||||| ||||||||||| ||||| | |||| || |||||| | |||| ||||| |||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
9852728 |
gaggaagggaagcagttttctggcaatgacccaagctgttgacaacccgcaaaatagagatattggagagagaagaggtgtcgaagcccatttccatcaa |
9852629 |
T |
|
| Q |
103 |
aggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttg |
202 |
Q |
| |
|
|||||||||||||| |||| || |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9852628 |
aggacttcatttcagagagaaccatgatatttagagacacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttac |
9852529 |
T |
|
| Q |
203 |
aatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttggga |
302 |
Q |
| |
|
||| | | | | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
9852528 |
aatccacaatgatgaaagagctgtcaaatattggagaccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgttcttaatttggga |
9852429 |
T |
|
| Q |
303 |
ggtagacaaactccttcacaaaatgacagctttt |
336 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| |
|
|
| T |
9852428 |
ggtagacaaactccttcagaaaatgacaactttt |
9852395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 10360879 - 10361208
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaaca-gagacgttggagagaggagaggtgtcggagctcatttccat |
99 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| || |||| ||| ||||| | |||| |||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
10360879 |
gcgaggaagggaggcagttttctggtaatgactcaagctgtcgaca-ttcaaaaaatacgagatgttggagagaggagaggtgtcgaagcccatttccat |
10360977 |
T |
|
| Q |
100 |
caaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccctt |
199 |
Q |
| |
|
||||||||||||||||| ||||| | ||| || || ||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10360978 |
caaaggacttcatttcagagagatgatggatttccagagacacaagggagacgggtagcaatgactccttcatcaaggtgttaactatatcatcaccctt |
10361077 |
T |
|
| Q |
200 |
ttgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttg |
299 |
Q |
| |
|
| ||||| | ||| ||||||||||||||||||||||||||||||||| || || ||| |||||||| ||| || |||| |||||||||||||||| |
|
|
| T |
10361078 |
tccaatacccaagttggaaagtgctgtcaaatattggagaccccattctgtcacaggcagtgctgttcttttggactgtatcataattgattgtaatttg |
10361177 |
T |
|
| Q |
300 |
ggaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
10361178 |
ggaggtagacaaactccttcacaaaacgaca |
10361208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 140 - 330
Target Start/End: Complemental strand, 10666318 - 10666128
Alignment:
| Q |
140 |
cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttgaatactcgagtaggaaagtgctgtcaaatattggaga |
239 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10666318 |
cacaagggatatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttcaatactcaagtaggaaagtgctgtcaaatattggaga |
10666219 |
T |
|
| Q |
240 |
ccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgggaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||| | | || |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10666218 |
ccccattccgtaaccggcggagttattctttgagatgaaatcacaattgtttgtaatttgggaggtagacaaactccttcacaaaatgaca |
10666128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 3 - 330
Target Start/End: Original strand, 10372922 - 10373249
Alignment:
| Q |
3 |
gaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatcaa |
102 |
Q |
| |
|
||||||||||||| || ||||| |||| |||||| | | |||||| ||||| ||||| || |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
10372922 |
gaggaagggaggctgtcttctggtaatgactcaagcttttcacaattaaaaaaatagagatttttgagagaggagaggtgtcgaagcccatttccatcaa |
10373021 |
T |
|
| Q |
103 |
aggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttg |
202 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10373022 |
aggacttcatttcagagagataattgatacgtagatgcacaagggagatgggtagcaacgactccttcatcaaggtgttaactatatcatcatcctttct |
10373121 |
T |
|
| Q |
203 |
aatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttggga |
302 |
Q |
| |
|
||||||| || || || ||||| | || ||||||||||||||||||||||||||||| | || || | | |||||| |||||||||||||||| || |
|
|
| T |
10373122 |
aatactcaagcttgacagagctgttagatcttggagaccccattccgtaaccggcggtgttattcttcgagatgaaatccaaattgattgtaatttgaga |
10373221 |
T |
|
| Q |
303 |
ggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
10373222 |
ggtagacaaactccttcacaaaatgaca |
10373249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 328
Target Start/End: Complemental strand, 11772224 - 11771898
Alignment:
| Q |
2 |
cgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatca |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| || || ||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
11772224 |
cgaggaagggaggcagttttctggcaatgactcgagctgttgacaattccaaaaatagagatattggagagaggagaggtgtcgaagcccatttccatca |
11772125 |
T |
|
| Q |
102 |
aaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccctttt |
201 |
Q |
| |
|
|| ||||||||||||| |||||| ||||| || |||||||||||||| || |||||| |||| |||||||||||| | | ||||| |||| | ||| |
|
|
| T |
11772124 |
aaagacttcatttcatagagatcaatgatagacaggtccacaagggagataggcagcaacaactctttcatcaaggtggtgactatattatcatcatttc |
11772025 |
T |
|
| Q |
202 |
gaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttggg |
301 |
Q |
| |
|
|||| | | | ||||| | || | ||||||||||||||| ||||| || |||| |||| |||||| | || |||||||||||||||| ||||| |
|
|
| T |
11772024 |
caataaccaatttcgaaagagtggtttggttttggagaccccattctgtaactggtggtgttgttatttgggaaaaactcacaattgattgtaagttggg |
11771925 |
T |
|
| Q |
302 |
aggtagacaaactccttcacaaaatga |
328 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
11771924 |
aggtagacaaactccttcacaaaatga |
11771898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 2 - 328
Target Start/End: Original strand, 11779061 - 11779387
Alignment:
| Q |
2 |
cgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatca |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| || || ||||||||||||||| ||||| || |||||||||||||||||| ||| |||||||||| |
|
|
| T |
11779061 |
cgaggaagggaggcagttttctggcaatgactcgagctgttgacaattccaaaaatagagatattcgagagaggagaggtgtcgaagcccatttccatcg |
11779160 |
T |
|
| Q |
102 |
aaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcaccctttt |
201 |
Q |
| |
|
|||||||||||||||| |||||| ||||| || |||||||||||||| ||||||||| | ||||||||||||||| | | ||||| |||| | ||| |
|
|
| T |
11779161 |
aaggacttcatttcatagagatcaatgatagacaggtccacaagggagataggtagcaacaaatccttcatcaaggtggtgactatattatcatcatttc |
11779260 |
T |
|
| Q |
202 |
gaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttggg |
301 |
Q |
| |
|
|||| | | ||||| | || | ||||||||||||||| ||||| || |||| |||| |||||| | || |||||||||||||||||||||| |
|
|
| T |
11779261 |
caataaccagttctgaaagagtggtttggttttggagaccccattctgtaactggtggtgttgttatttgggaaaaactcacaattgattgtaatttggg |
11779360 |
T |
|
| Q |
302 |
aggtagacaaactccttcacaaaatga |
328 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
11779361 |
aggtagacaaactctttcacaaaatga |
11779387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 10091779 - 10091459
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||| || |||| | || ||| ||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
10091779 |
gcgaggaagggaggcagttttctggcaatgactgaagctgtcgacattgacagaaatcgagacgttggagagaggagaggtgtcgaagcccatttccatc |
10091680 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
|||||||||||| | || ||||||| || |||||||||||||||||||||||||||| ||| |||| |||||| ||||||| | ||| | |
|
|
| T |
10091679 |
aaaggacttcatcttatagagatcc---------agagacacaagggagatgggtagcaacgactccgtcaccaagttgttaactatatcacctgcctct |
10091589 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
| ||| || | | |||||| | || | || ||||||||||||||||||||||||||||| | |||||| || | |||| ||||| ||||||||||| |
|
|
| T |
10091588 |
ttaatcatcaattcggaaagagtggttagatcttggagaccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgg |
10091489 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10091488 |
gaggtagacaaactccttcacaaaatgaca |
10091459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 10198661 - 10198341
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||| || |||| | || ||| ||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
10198661 |
gcgaggaagggaggcagttttctggcaatgactgaagctgtcgacattgacagaaatcgagacgttggagagaggagaggtgtcgaagcccatttccatc |
10198562 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
|||||||||||| | || ||||||| || |||||||||||||||||||||||||||| ||| |||| |||||| ||||||| | ||| | |
|
|
| T |
10198561 |
aaaggacttcatcttatagagatcc---------agagacacaagggagatgggtagcaacgactccgtcaccaagttgttaactatatcacctgcctct |
10198471 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
| ||| || | | |||||| | || | || ||||||||||||||||||||||||||||| | |||||| || | |||| ||||| ||||||||||| |
|
|
| T |
10198470 |
ttaatcatcaattcggaaagagtggttagatcttggagaccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgg |
10198371 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10198370 |
gaggtagacaaactccttcacaaaatgaca |
10198341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10503573 - 10503378
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| || ||||||| ||| ||| || ||||||||||| ||||| ||| |||||||||| |
|
|
| T |
10503573 |
gcgaggaagggaggcagttttctggcaatgactcaagctgtagacaattaagaaattcaagattttcgagagaggagatttgtcgaagcccatttccatc |
10503474 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacc |
196 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10503473 |
aaaggacttcatttcatagagatcactgatatatagagatgcaagggagatgggaagcaacgactccttcatcaaggtgttaaatatatcatcacc |
10503378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 10531420 - 10531327
Alignment:
| Q |
233 |
ttggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgggaggtagacaaactccttcacaaaat |
326 |
Q |
| |
|
||||||||||||||| || || ||||| | || | ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10531420 |
ttggagaccccattctgttacaggcggcgttgctctttggaaagatatcacaattgattgtaatttgggaggtagacaaattccttcacaaaat |
10531327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 13852815 - 13852868
Alignment:
| Q |
277 |
aaatcacaattgattgtaatttgggaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13852815 |
aaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgaca |
13852868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 10680172 - 10680127
Alignment:
| Q |
279 |
atcacaattgattgtaatttgggaggtagacaaactccttcacaaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10680172 |
atcacaattgattgtaatttgggaggtagacaaactccttcacaaa |
10680127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 10193020 - 10192887
Alignment:
| Q |
68 |
gagagaggagaggtgtcggagctcatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcc |
167 |
Q |
| |
|
|||| ||||||||||| | ||| |||||||||||||||||||||| | || |||||| |||| || ||||||||||||||||||||||| ||| |
|
|
| T |
10193020 |
gagaaaggagaggtgttgaagcccatttccatcaaaggacttcatgttatagagatcaccaatattcagagacacaagggagatgggtagcaacggctct |
10192921 |
T |
|
| Q |
168 |
ttcatcaaggtgttaaatatatcatcaccctttt |
201 |
Q |
| |
|
|| | ||||||||||| ||||||| || |||||| |
|
|
| T |
10192920 |
tttaccaaggtgttaactatatcaccatcctttt |
10192887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 10503291 - 10503246
Alignment:
| Q |
283 |
caattgattgtaatttgggaggtagacaaactccttcacaaaatga |
328 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10503291 |
caattgattgtaatttgggaggaagacaaactccttcacaaaatga |
10503246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 10086100 - 10085967
Alignment:
| Q |
68 |
gagagaggagaggtgtcggagctcatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactcc |
167 |
Q |
| |
|
|||| ||||||||||| | ||| |||||||||||||||||||||| | || |||||| |||| || |||||||||||||| |||||||| ||| |
|
|
| T |
10086100 |
gagaaaggagaggtgttgaagcccatttccatcaaaggacttcatgttatagagatcaccaatattcagagacacaagggagatggttagcaacggctct |
10086001 |
T |
|
| Q |
168 |
ttcatcaaggtgttaaatatatcatcaccctttt |
201 |
Q |
| |
|
|| | ||||||||||| ||||||| || |||||| |
|
|
| T |
10086000 |
tttaccaaggtgttaactatatcaccatcctttt |
10085967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 10666398 - 10666347
Alignment:
| Q |
60 |
agacgttggagagaggagaggtgtcggagctcatttccatcaaaggacttca |
111 |
Q |
| |
|
||||||| |||||||||||||||| | ||| ||||||||| ||||||||||| |
|
|
| T |
10666398 |
agacgtttgagagaggagaggtgtagaagcccatttccattaaaggacttca |
10666347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 10531633 - 10531579
Alignment:
| Q |
140 |
cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatca |
194 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||| || |||||||| |||||||||| |
|
|
| T |
10531633 |
cacaagggagatgggaagcaatgactcgttcagcacggtgttaactatatcatca |
10531579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 10680431 - 10680377
Alignment:
| Q |
140 |
cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatca |
194 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||| || |||||||| |||||||||| |
|
|
| T |
10680431 |
cacaagggagatgggaagcaatgactcgttcagcacggtgttaactatatcatca |
10680377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 13852563 - 13852636
Alignment:
| Q |
43 |
gacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatcaaaggacttcatttca |
116 |
Q |
| |
|
||||||||||||| | |||| | |||||||||||| ||||| ||| |||||||||| || |||||||||||| |
|
|
| T |
13852563 |
gacaattccaaaatccgagattgttgagagaggagagatgtcgaagcccatttccatcgaaagacttcatttca |
13852636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 54680 - 55015
Alignment:
| Q |
1 |
gcgaggaagggaggcagttttctgccaatgtctcaagttgatgacaattccaaaaacagagacgttggagagaggagaggtgtcggagctcatttccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
54680 |
gcgaggaagggaggcagttttctggcaatgtctcaagttgttgacaaaacaaaaaacagagactttggagagaggagaggtgtcgcagcccatttccatc |
54779 |
T |
|
| Q |
101 |
aaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttt |
200 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54780 |
aaaggacttcatttcagagagatcacagatacgtagatgcacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcacccttt |
54879 |
T |
|
| Q |
201 |
tgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgg |
300 |
Q |
| |
|
||||| | | | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54880 |
acaatacacaaaaaaaaaagagctgtcaaatattggagaccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgattgtaatttga |
54979 |
T |
|
| Q |
301 |
gaggtagacaaactccttcacaaaatgacagctttt |
336 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
54980 |
gaggtagacaaactccttcagaaaatgacaactttt |
55015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 65 - 330
Target Start/End: Complemental strand, 26909815 - 26909550
Alignment:
| Q |
65 |
ttggagagaggagaggtgtcggagctcatttccatcaaaggacttcatttcattgagatccttgatatctagttccacaagggagatgggtagcaacgac |
164 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||| |||| | ||| ||||||||||||||||||||| || |
|
|
| T |
26909815 |
ttggagagaggagaggcgtcgaagcccatttccatcaaaggacttcatttcatagagatccatgatttgtagagaaacaagggagatgggtagcaacaac |
26909716 |
T |
|
| Q |
165 |
tccttcatcaaggtgttaaatatatcatcacccttttgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccggcggtgctg |
264 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| || ||| || | | ||||| | || | || |||||||| |||||||||||| | ||||| || |
|
|
| T |
26909715 |
tccttcatcaaggtgttaaatgtatcatgaccctctttgatagtcaattctgaaagagtggttagatcttggagacaccattccgtaacagacggtgttg |
26909616 |
T |
|
| Q |
265 |
ttttttgggtagaaatcacaattgattgtaatttgggaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|| |||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
26909615 |
ttatttgagaccaaaggtcaattgattgtaagttgggaggtagacaaacaccttcacaaaatgaca |
26909550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 330
Target Start/End: Complemental strand, 11487881 - 11487691
Alignment:
| Q |
140 |
cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttgaatactcgagtaggaaagtgctgtcaaatattggaga |
239 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||| || | ||||| || |||| || || |||| |
|
|
| T |
11487881 |
cacaagggagatgggtagcaacgactgcttcatcaaggtgttaagtatatcatcacccactccaatagtcaaccgtgaaagagcggtcagatctttgaga |
11487782 |
T |
|
| Q |
240 |
ccccattccgtaaccggcggtgctgttttttgggtagaaatcacaattgattgtaatttgggaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||||||||||||| ||||| | || | ||| | ||||| ||||||||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
11487781 |
ccccattccgtaacaggcggcgttgatctttccgacaaaatctcaattgattctaatttgggaggtagagaaacatcttcacaaaatgaca |
11487691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 44955024 - 44955070
Alignment:
| Q |
288 |
gattgtaatttgggaggtagacaaactccttcacaaaatgacagctt |
334 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
44955024 |
gattgtaatttgggaggtaggcaaacaccttcacaaaatgacagctt |
44955070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 330
Target Start/End: Original strand, 17850156 - 17850333
Alignment:
| Q |
156 |
agcaacgactccttcatcaaggtgttaaatatatcatcacccttttgaatactcgagtaggaaagtgctgtcaaatattggagaccccattccgtaaccg |
255 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| ||||| || |||| | | ||||| || || | ||||||||||||||| || || | |
|
|
| T |
17850156 |
agcaacgactccttcatcaaggtgttcactatatcatcatcctttccaagactcaatgatgaaagagcagttaggccttggagaccccattctgttacag |
17850255 |
T |
|
| Q |
256 |
gcgg---tgctgttttttgggtagaaatcacaattgattgtaatttgggaggtagacaaactccttcacaaaatgaca |
330 |
Q |
| |
|
|||| || |||| || ||| | ||| ||||||||||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
17850256 |
gcggggctgttgttcttcgggaatgaatatcaattgattgtaacttgggaggtagggaaactcctccacaaaatgaca |
17850333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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