View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_6 (Length: 627)
Name: NF16177_low_6
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 222 - 611
Target Start/End: Complemental strand, 14148157 - 14147765
Alignment:
| Q |
222 |
caatcaaaagcactcaacacatc---ttaaccgcagcatctcaaaataattttgttgcatcgaaggaccaaaacttccttcatattgcgtcaattaagaa |
318 |
Q |
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| T |
14148157 |
caatcaaaagcactcaacacatcatcttaaccgcaacatctcaaaatgattttgttgcatcgaaggaccaaaacttccttcatattgcttcaattaagaa |
14148058 |
T |
|
| Q |
319 |
aaaacttccattgtacgtgagattctttnnnnnnnnnttgcctttcaaagtgaacaatggtaagaaacataaggccaaaaattagtaagaagtccactcc |
418 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14148057 |
aaaacttccattgtacgtgagattctttaaaataaaattgcctttcaaagtgaacaatggtaagaaacataaggccaaaaattagtaagaagtccactcc |
14147958 |
T |
|
| Q |
419 |
agaggttagaatcccattacatgcattcccaaattactctacaaggttataatatccaaaagcagttaaggaatatcgctctcaaatcataccaagaaca |
518 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14147957 |
agaggttagaatcccattacatgcatccccaaattactctacaaggttataatatccaaaagcagttaaggaatatcgctctcaaatcataccaagaaca |
14147858 |
T |
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| Q |
519 |
agccattcaagctactgtttgacgcaatgtagtcgcataaaacactgaacatggacaacatctgatatttaaacatgactcaaccaaattcat |
611 |
Q |
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| T |
14147857 |
agccattcaagctactgtttgacgcaatgtagtcgcataaaacactgaacatggacaacatctgatatttaaacatgactcaaccaaattcat |
14147765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 14148362 - 14148221
Alignment:
| Q |
1 |
ccaacgaaagaaaaattacttagaatcctaagcatgagggtttctcagtaaattgtgtgaacctggaatgagtttataatgatagttggaatagtaagac |
100 |
Q |
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| T |
14148362 |
ccaacgaaagaaaaattagttagaatccaaagcatgagggtttctcagtaaattgtgtgaacctagaatgagtttataatgatagttggaatagtaagac |
14148263 |
T |
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| Q |
101 |
atatgaaagataaattcaacgaattaaataactacatcaagg |
142 |
Q |
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| T |
14148262 |
atatgaaagataaattcaacgaattaaataactacatcaagg |
14148221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 14496650 - 14496550
Alignment:
| Q |
30 |
aagcatgagggtttctcagtaaattgtgtgaacctggaatgagtttataatgatagttggaatagtaagacatatgaaagataaattcaacgaattaaat |
129 |
Q |
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||||||||| |||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||| |||||| || |||||| |||||||| |
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| T |
14496650 |
aagcatgagtgtttctcatgaaattgtgtgaacctgcaatgagtttatactgatagttg---tagtaagacataagaaagaaaagttcaacaaattaaat |
14496554 |
T |
|
| Q |
130 |
aact |
133 |
Q |
| |
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|||| |
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| T |
14496553 |
aact |
14496550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 469 - 576
Target Start/End: Complemental strand, 14154403 - 14154296
Alignment:
| Q |
469 |
aatatccaaaagcagttaaggaatatcgctctcaaatcataccaagaacaagccattcaagctactgtttgacgcaatgtagtcgcataaaacactgaac |
568 |
Q |
| |
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|||| |||||||||||| ||||| || |||||||| || || || ||||||||||||||||||| |||| ||| |||||||||||||| || ||||||| |
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| T |
14154403 |
aataaccaaaagcagttgaggaaaatatctctcaaaacacactaaaaacaagccattcaagctaccgtttaacgtaatgtagtcgcatacaatactgaac |
14154304 |
T |
|
| Q |
569 |
atggacaa |
576 |
Q |
| |
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|||||||| |
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| T |
14154303 |
atggacaa |
14154296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 14154575 - 14154502
Alignment:
| Q |
272 |
gttgcatcgaaggaccaaaacttccttcatattgcgtcaattaagaaaaaacttccattgtacgtgagattctt |
345 |
Q |
| |
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||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
14154575 |
gttgcataaaaggaccaaaatttccttcagattgcttcaattaagaaaaaacttccattgtaggtgagattctt |
14154502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 573 - 611
Target Start/End: Complemental strand, 14154269 - 14154231
Alignment:
| Q |
573 |
acaacatctgatatttaaacatgactcaaccaaattcat |
611 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
14154269 |
acaacagctgatatttaaacatgactcaaccaaattcat |
14154231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 14479556 - 14479649
Alignment:
| Q |
41 |
tttctcagtaaattgtgtgaacctggaatgagtttataatgatagttggaatagtaagacatatg-aaagataaattcaacgaattaaataact |
133 |
Q |
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|||||||| ||||||||||||||| ||||| |||| | ||| | || ||||||||||||||| | ||||||||| || || |||| ||||||| |
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| T |
14479556 |
tttctcaggaaattgtgtgaacctacaatgactttaaattgacaattagaatagtaagacataagaaaagataaactccacaaattcaataact |
14479649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 480
Target Start/End: Complemental strand, 14496308 - 14496244
Alignment:
| Q |
416 |
tccagaggttagaatcccattacatgcattcccaaattactctacaaggttataatatccaaaag |
480 |
Q |
| |
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|||||||||| | |||||||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
14496308 |
tccagaggttgaattcccattacatgcaacacgaaattacaatacaaggttataatatccaaaag |
14496244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 14496497 - 14496417
Alignment:
| Q |
227 |
aaaagcactcaacacatcttaaccgcagcatctc-aaaataattttgttgcatcgaaggaccaaaacttccttcatattgc |
306 |
Q |
| |
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|||||||||| ||||||||||| ||| |||||| |||| |||||| |||||| |||||||||| | |||| |||||||| |
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| T |
14496497 |
aaaagcactccacacatcttaattgcaacatctcaaaaacaattttcttgcatagaaggaccaatatttccaccatattgc |
14496417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 9812363 - 9812469
Alignment:
| Q |
14 |
aattacttagaatcctaagcatg-agggtttctcagtaaattgtgtgaacctggaatgagtttataatgatagttggaatagtaagacatatgaaagata |
112 |
Q |
| |
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|||||||||||||| ||||||| ||||||| ||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||| |||||||| |
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| T |
9812363 |
aattacttagaatctaaagcatgcagggttttgcagtaaattgtatgaacctagaatgagtctatactgatagttggaatagtaagacataagaaagata |
9812462 |
T |
|
| Q |
113 |
aattcaa |
119 |
Q |
| |
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||||||| |
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| T |
9812463 |
aattcaa |
9812469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 9812599 - 9812678
Alignment:
| Q |
238 |
acacatcttaaccgcagcatctcaaaataattttgttgcatcgaaggaccaaaacttccttcatattgcgtcaattaaga |
317 |
Q |
| |
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||||| |||||| ||| ||||||||||| ||||| |||||| | |||||||||| |||| ||||||||| |||||||||| |
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| T |
9812599 |
acacaccttaactgcaacatctcaaaatgattttattgcatagtaggaccaaaatttccatcatattgcttcaattaaga |
9812678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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