View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_60 (Length: 348)
Name: NF16177_low_60
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 42641017 - 42641325
Alignment:
| Q |
17 |
ttttggacaaacgttttaatttatttcttactagaaactcccgcaaataaattgtgacacaagtaactgaggtttcttcacaaaccagtttatactcagc |
116 |
Q |
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| T |
42641017 |
ttttggacaaacgttttaatttatttcttactagaaactcccgcaaataaattgtgacacaagtaactgaggtttcttcgcaaaccaatttgtactcagc |
42641116 |
T |
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| Q |
117 |
tctctaaataacgtgnnnnnnnngtaatgtctcgtaattcttgcaaatatttattttatcaataatgattgaaaataaatttacaaatttaaggtcgtgg |
216 |
Q |
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| T |
42641117 |
tctctaaataacttgtttttt--gtaatgtctcgtaattcttgcaaatatttattttatcaataatgattgaaaataaatttacaaatttaaggtcgtgg |
42641214 |
T |
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| Q |
217 |
ttagtatattcatgttatagatttgtggtttaaaaatatgatttatttcatatcccaaagaaaacaaagaagactaattgtggtccaattgaacctatag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
42641215 |
ttagtatattcatgttatagatttgtggtttaaaaatatgatttatttcatatcccaaa-----catagaagactaattgtggtccaattgaacctatag |
42641309 |
T |
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| Q |
317 |
aga-ggggtatttttt |
331 |
Q |
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||| |||||||||||| |
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| T |
42641310 |
agagggggtatttttt |
42641325 |
T |
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