View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_61 (Length: 348)
Name: NF16177_low_61
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 49871718 - 49872048
Alignment:
| Q |
1 |
acaaatcctgaaagaccattgattatatccaaagcattgttacttagctccaaagaagcgttaagaaccttagccatggtttgtcctgcatgggtagttg |
100 |
Q |
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| T |
49871718 |
acaaatcctgaaagaccattgattatatccaaagcattgttacttagctccaaagaagcgttaagaaccttagccatggtttgtcctgcatgggtagttg |
49871817 |
T |
|
| Q |
101 |
tgttctcaaatccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871818 |
tgttctcaaatccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaa |
49871917 |
T |
|
| Q |
201 |
tttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagcc |
300 |
Q |
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| T |
49871918 |
tttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagcc |
49872017 |
T |
|
| Q |
301 |
aattccttgtagagtgttgagttgtggattt |
331 |
Q |
| |
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|||||||||||||||||||||||||| |||| |
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| T |
49872018 |
aattccttgtagagtgttgagttgtgtattt |
49872048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 49865787 - 49866117
Alignment:
| Q |
1 |
acaaatcctgaaagaccattgattatatccaaagcattgttacttagctccaaagaagcgttaagaaccttagccatggtttgtcctgcatgggtagttg |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
49865787 |
acaaatcctgaaagtccattgattatatccaaagcattgttagttagctccaaagaagccttaagaaccttagccatggtttgttctgcatgggtagttg |
49865886 |
T |
|
| Q |
101 |
tgttctcaaatccatctaaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
49865887 |
tgttctcaaatccatataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaatttttctaatatcaaa |
49865986 |
T |
|
| Q |
201 |
tttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49865987 |
tttatccaatgagtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagct |
49866086 |
T |
|
| Q |
301 |
aattccttgtagagtgttgagttgtggattt |
331 |
Q |
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||||||||||||||| ||||||| ||||||| |
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| T |
49866087 |
aattccttgtagagttttgagttatggattt |
49866117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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