View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_63 (Length: 345)
Name: NF16177_low_63
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 23471463 - 23471134
Alignment:
| Q |
16 |
atacatgtcaagttggtctatagatcaataatgctgaaaagtcaaaataatgctgaaagagaaaacagacagatcaagcatgacaaatcttggtgatcca |
115 |
Q |
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| T |
23471463 |
atacatgtcaagttggtctatagatcaataatgctgaaaagtcaaaataatgctgaaagagaaaacagacagatcaagcatgacaaatcttggtgatcca |
23471364 |
T |
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| Q |
116 |
tattgcacataacttgttagtgtttctgttgtatagttagatttatattcttcaatatgataacatattttccttgttttgtgctacgaagcactga--- |
212 |
Q |
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| T |
23471363 |
tattgcacataacttgttagtgtttctgttgtatagttagatttatattcttcaatatgataacatattttccttgttttgtgctacgaagcactgacac |
23471264 |
T |
|
| Q |
213 |
---------------cacaacactaacacatagacaccagtgataatttgagaaaataaaagtgaaaatatgtaattgaaagtgctggtgttggacgaca |
297 |
Q |
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| T |
23471263 |
ataagggacaccggacacaacattaacacatatacaccggtaataatttgagaaaataaaaatgaaaatatgtaattgaaagtgctggtgttggacgaca |
23471164 |
T |
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| Q |
298 |
cacattcaatctgaagtgctagtactacat |
327 |
Q |
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| T |
23471163 |
cacattcaatctgaagtgctagtaccacat |
23471134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 23435977 - 23435656
Alignment:
| Q |
16 |
atacatgtcaagttggtctatagatcaataatgctgaaaagtcaaaataatgctgaaagagaaaacagacagatcaagcatgacaaatcttggtgatcca |
115 |
Q |
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| T |
23435977 |
atacatgtcaagttggtctatagatcaataatgctgaaaagtcaaaataatgctgaaagagaaaacagacatatcaagcatgacaaatcttggtgatcca |
23435878 |
T |
|
| Q |
116 |
tattgcacataacttgttagtgtttctgttgtatagttagatttatattcttcaatatgataacatattttccttgttttgtgctacgaagcactga--- |
212 |
Q |
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| T |
23435877 |
tattgcacataacttgttagtgtttctgttgtatagttagatttatattcttcaatatgataacatattttccttgttttgtgctacgaagcactgacac |
23435778 |
T |
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| Q |
213 |
---------------cacaacactaacacatagacaccagtgataatttgagaaaataaaagtgaaaatatgtaattgaaagtgctggtgttggacgaca |
297 |
Q |
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| T |
23435777 |
ataagggacaccggacacaacattaacacatatacaccggtaataatttgagaaaataaaaatgaaaatatgtaattgaaagtgctggtgttggacgaca |
23435678 |
T |
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| Q |
298 |
cacattcaatctgaagtgctag |
319 |
Q |
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| T |
23435677 |
cacgttcaatctgaagtgctag |
23435656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 43843684 - 43843637
Alignment:
| Q |
215 |
caacactaacacatagacaccagtgataatttgagaaaataaaagtga |
262 |
Q |
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| T |
43843684 |
caacactaacacgtagacaccaataataatttgagaaaataaaagtga |
43843637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 7367535 - 7367577
Alignment:
| Q |
212 |
acacaacactaacacatagacaccagtgataatttgagaaaat |
254 |
Q |
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| T |
7367535 |
acacgacactaacacatagacaccaataataatttgagaaaat |
7367577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 13338727 - 13338682
Alignment:
| Q |
209 |
ctgacacaacactaacacatagacaccagtgataatttgagaaaat |
254 |
Q |
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| T |
13338727 |
ctgacacaacactaacacgtcgacaccagtaataatttaagaaaat |
13338682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 35335588 - 35335633
Alignment:
| Q |
217 |
acactaacacatagacaccagtgataatttgagaaaataaaagtga |
262 |
Q |
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| T |
35335588 |
acactgacacatagacactagtaataatttgagaaaatgaaagtga |
35335633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 4493824 - 4493783
Alignment:
| Q |
211 |
gacacaacactaacacatagacaccagtgataatttgagaaa |
252 |
Q |
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| T |
4493824 |
gacacaacactaacacatacacaccagtaatcatttgagaaa |
4493783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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