View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_65 (Length: 342)
Name: NF16177_low_65
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 1046443 - 1046272
Alignment:
| Q |
11 |
cacagacaatatagtacttgtttctctaacttataaattgttctgtgattaaagtagaaccatcttaaagttatttgaacactgcaaaaaattaataata |
110 |
Q |
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| T |
1046443 |
cacagacaatatagtacttgtttctctaacttataaattgttctgtgattaaagtagaaccatcttaaagttatttgaacactgcaaaaaattaataata |
1046344 |
T |
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| Q |
111 |
tataaatatgggtggaccatggtacaccttatatgtgtccctgattacatat--atattagataaaagtaaa |
180 |
Q |
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| T |
1046343 |
tataaatatgggtggaccatggtacaccttatatgtgtccctcattacatatatatattagataaaagtaaa |
1046272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 1045029 - 1044947
Alignment:
| Q |
260 |
tgtttatagagaactgaaacagtaaaaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctctttattc |
342 |
Q |
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| T |
1045029 |
tgtttatagagaactgaaacagtaaaaggatgcgaagtaggaaaacaaactatgtcaacaaaatctattattcctgtttattc |
1044947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 1045144 - 1045056
Alignment:
| Q |
175 |
agtaaatgactattaatcattgacggtgagaaatatgtagaaatcagcattagccattagctaatatnnnnnnnttaccaagtgttgtt |
263 |
Q |
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| T |
1045144 |
agtaaatgactattaatcattgacggtgagaacaatgtagaaatcagcattagccattagctaatataaaaaaattaccaagtgttgtt |
1045056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 1024240 - 1024314
Alignment:
| Q |
159 |
atatatattagataaaagtaaatgactattaatcattgacggtgagaaatatgtagaaatcagcattagccatta |
233 |
Q |
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| T |
1024240 |
atatatatcagacaaaagtaaatgaccattgatcattgagggtgagaacactgcagatattagcattagccatta |
1024314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 40641731 - 40641681
Alignment:
| Q |
156 |
tacatatatattagataaaagtaaatgactattaatcattgacggtgagaa |
206 |
Q |
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| T |
40641731 |
tacatatatattagataaaagtaaacgaccattgatcattgatggtgagaa |
40641681 |
T |
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