View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_68 (Length: 330)
Name: NF16177_low_68
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 209 - 324
Target Start/End: Original strand, 28243540 - 28243655
Alignment:
| Q |
209 |
catttgatttttcctctaccatgggtaaagcttccgaagatagtaaatctgatttgttctgtataaagtggttgtagagctcagtttgttgtatcagaaa |
308 |
Q |
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| T |
28243540 |
catttgatttttcctctaccatgggtaaagcttccgaagatagtaaatctgatttgttctgtataaagtggctgtagagctcagtttgttgtatcagaaa |
28243639 |
T |
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| Q |
309 |
attaagcctttgctac |
324 |
Q |
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| T |
28243640 |
attaagcctttgctac |
28243655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 28243186 - 28243294
Alignment:
| Q |
104 |
taacccaactgttctgctatttgaatgcttaaaaagttgttaatttttgaaccatgtagttgcatgg-cactaaacaaggttactttataggttgcaaaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28243186 |
taacccaactgttctgctatttgaatgcttaaaaagttgttaatcattgaaccatgtagttgcatggccactaaacaaggttactttataggttgcaaaa |
28243285 |
T |
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| Q |
203 |
caattgcat |
211 |
Q |
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| T |
28243286 |
taattgcat |
28243294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 33842690 - 33842736
Alignment:
| Q |
39 |
cttgaaactaatagaatcaaccagagtttgaaagcataagaaattca |
85 |
Q |
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| T |
33842690 |
cttgaaactgatagaatcaaccacagttggaaagcatacgaaattca |
33842736 |
T |
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