View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_76 (Length: 312)

Name: NF16177_low_76
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_76
NF16177_low_76
[»] chr7 (1 HSPs)
chr7 (19-312)||(37702213-37702506)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 37702213 - 37702506
Alignment:
Q  19 aagatgacaaaaagaaaacaaaataaatatgtatatattccttaacactaaactcacatttatttctccattannnnnnnccgatgataatgacgaagag 118  Q
    ||||||||||||||||||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||       ||||||||||||||||||||    
T  37702213 aagatgacaaaaagaaaacaaaacaaatatgtatatatacattaacactgaactcacatttatttctccattatttttttccgatgataatgacgaagag 37702312  T
Q  119 tgtctgaacttgtacattcaaaagagcatttgttagagttttaaatacagatatttgtgcactagatcatgtagaacccacccccattatgaagttgaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37702313 tgtctgaacttgtacattcaaaagagcatttgttagagttttaaatacagatatttgtgcactagatcatgtagaacccacccccattatgaagttgaag 37702412  T
Q  219 atcttcttgtgttaaaaaatgaagtttgtgaacatatatgattttggcaagctggtttgaaaatgaattgtacgtttattggtggacacattac 312  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  37702413 atcttcttgtgttcaaaaatgaagtttgtgaacatatatgattttggcaagctgggttgaaaatgacttgtacgtttattggtggacacattac 37702506  T

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