View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_78 (Length: 309)
Name: NF16177_low_78
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 42 - 290
Target Start/End: Complemental strand, 38869104 - 38868856
Alignment:
| Q |
42 |
tttaggatcggtttcttatcgttgtttactaagcagtttccatggcaaacgaacatggaatcacacttccagttctaaaatctggaattgggtttctcca |
141 |
Q |
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| T |
38869104 |
tttaggatcggtttcttatcgttgtttactaagcagtttccatggcaaacgaacatggaatcgcacttccagttctaaaatctggaattgggtttctcca |
38869005 |
T |
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| Q |
142 |
tgaagtaaaaggcgtgtttcacggcgcaaaagggaagaatatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgag |
241 |
Q |
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| T |
38869004 |
tgaagtaaaaggcgtgtttcacggcgcaaaagggaagaatatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgag |
38868905 |
T |
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| Q |
242 |
tcagacttccagttcaagaattcaaacaaatggtgaatgaggtccttaa |
290 |
Q |
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| T |
38868904 |
tcagacttccagttcaagaattcaaacaaatggtgaatgaggtccttaa |
38868856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 39046578 - 39046650
Alignment:
| Q |
80 |
tccatggcaaacgaacatggaatcacacttccagttctaaaatctggaattgggtttctccatgaagtaaaag |
152 |
Q |
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| T |
39046578 |
tccatggcaaatgaaaatgaaataacatttccagttgcaaaatctggaatagggtttctccatgaagtaaaag |
39046650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 30865374 - 30865286
Alignment:
| Q |
196 |
aaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcag---acttccagttcaagaattcaaacaaatggtgaatga |
281 |
Q |
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| T |
30865374 |
aaagacatagatgatttcaagacctgcatgaagaatgatcatcaaatcatcatacttccagttcaagaattctaacaaaaggtgaatga |
30865286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 290
Target Start/End: Complemental strand, 33468932 - 33468721
Alignment:
| Q |
80 |
tccatggcaaacgaacatggaatcacacttccagttctaaaatctggaattgggtttctccatgaagtaaaaggcgtgtttcacggcgcaaaagggaaga |
179 |
Q |
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| T |
33468932 |
tccatggaaaacgaacatggaatcacacttccagttctaaaatctgaaatagggtttctccatgaagtaaaaactgtgtttcatg--gtaagagagaaaa |
33468835 |
T |
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| Q |
180 |
atatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgagt---cagacttccagttcaagaattcaaacaaatggtg |
276 |
Q |
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| T |
33468834 |
gtatgaagagtttataaaagacatacatgcttttaagacctggatggataataatcatcgaatcaccagacttccagttaaaaaattcaaagaaaggatg |
33468735 |
T |
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| Q |
277 |
aatgaggtccttaa |
290 |
Q |
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| T |
33468734 |
aataaggtacttaa |
33468721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 290
Target Start/End: Original strand, 3045579 - 3045688
Alignment:
| Q |
181 |
tatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcagacttccagttcaagaattcaaacaaatggtgaatg |
280 |
Q |
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| T |
3045579 |
tatgatgagtttataaaagccatagatgatttcaagacctgcatgaaggatcatcatccaatcgtacttccagttcaagagttcaaagaaagggtgaacg |
3045678 |
T |
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| Q |
281 |
aggtccttaa |
290 |
Q |
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| T |
3045679 |
aggtacttaa |
3045688 |
T |
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