View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_79 (Length: 308)
Name: NF16177_low_79
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 30946205 - 30946497
Alignment:
| Q |
1 |
ggaacgtcatttgtggcgtgtgcacaccttctgcagtttaaagcaacgtgagggcatttcgcgacggttagagccaacaactggaataagcgccaagagg |
100 |
Q |
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| T |
30946205 |
ggaacgtcatttgtggcgtgtgcacaccttctgcagtttaaagcaatgtgagggcatttcgcgacgattagagccaacagctggaataagcgccaagagg |
30946304 |
T |
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| Q |
101 |
gcattctgcggctgtctatattttgcggtttttcactttggtcatggcattcgcggcggttccaaactgccataattgttgccatttattttattgaaat |
200 |
Q |
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| T |
30946305 |
gcattccgcggctgtttatattttgcggtatttgactttggtcatggcattcgcggcggttccaaactgccataattgttgccatttattttattgaaat |
30946404 |
T |
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| Q |
201 |
aatttcttttaagtattcatttttaccacttagggtagcaagataaggacaacaatttaaggtcaatcatgtcaaccagttaggagtttagtg |
293 |
Q |
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| T |
30946405 |
aatttcttttaagtattcatttttaccacttagggtagcaagataaggacaacaatttaaggtcaatcatgtcaaccagttaggagtttagtg |
30946497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 66 - 290
Target Start/End: Original strand, 30956506 - 30956730
Alignment:
| Q |
66 |
ggttagagccaacaactggaataagcgccaagagggcattctgcggctgtctatattttgcggtttttcactttggtcatggcattcgcggcggttccaa |
165 |
Q |
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| T |
30956506 |
ggttagagccaaccactaaaagaagcgccttgagggaattctgcggctgtttgtagtttgcagtttttgacttcgttcatggctttcacagtggttccaa |
30956605 |
T |
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| Q |
166 |
actgccataattgttgccatttattttattgaaataatttcttttaagtattcatttttaccacttagggtagcaagataaggacaacaatttaaggtca |
265 |
Q |
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| T |
30956606 |
actgccgtaattgttactatttattttattccatgattttctttgaagtattcatttttgccactcatggtagcaagattaggacatcaattcaaggtca |
30956705 |
T |
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| Q |
266 |
atcatgtcaaccagttaggagttta |
290 |
Q |
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| T |
30956706 |
atcacgtcacccatttaggagttta |
30956730 |
T |
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