View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_80 (Length: 307)
Name: NF16177_low_80
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_80 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 15885627 - 15885932
Alignment:
| Q |
1 |
atttgtaatcaatggtgtggttggcttttgacatgtattttcccatcaaccgtcaacatgacaaacatcgccctaattccaaaaggtgaattccaagttt |
100 |
Q |
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| T |
15885627 |
atttgtaatcaatggtgtggttggcttttgacatgtattttcccatcaaccgtcaacatgaaaaacatcgccctaattccaaaaggtgaattccaagttt |
15885726 |
T |
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| Q |
101 |
ctatgaaagatttgtgacctattgctctatgtaaaagttagaggaaaatatggcgatgttgttttgaagcttgatattagcaagacataggacataattg |
200 |
Q |
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| T |
15885727 |
ctatgaaagatttgtgacctattgctctatgtaaaagttagaggaaaatatggcgatgttgttttgaagcttgatattagcaagacatcggacataattg |
15885826 |
T |
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| Q |
201 |
acttgaattatctcaaaggggttatgatggaaatgagtttctctcatcaatagaacaaatggattatgatgtgtgttgaaaccgtaaattattctatttt |
300 |
Q |
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| T |
15885827 |
acttgaattatctcaaaggggttatgatggaaatgagtttttctcatcaatagaac-aatggattatgatgtgtgttgaaaccgtaaattattctatttt |
15885925 |
T |
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| Q |
301 |
gtttaat |
307 |
Q |
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| T |
15885926 |
gtttaat |
15885932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 28958929 - 28959059
Alignment:
| Q |
1 |
atttgtaatcaatggtgtggttggcttttgacatgtattttcccatcaaccgtcaacatgacaaacatcgccctaattccaaaaggtgaattccaagttt |
100 |
Q |
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|||| |||||||| || |||||||||| |||| || ||||||||||||| | || ||||||||||| ||||||| | ||||||||| | | |||||| |
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| T |
28958929 |
atttttaatcaatattgcggttggctttcaacatttactttcccatcaaccttaaatatgacaaacatatccctaatccaaaaaggtgagtccaaagttt |
28959028 |
T |
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| Q |
101 |
ctatgaaagatttgtgacctattgctctatg |
131 |
Q |
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| T |
28959029 |
ctatgaaagattagtgacctattgctctatg |
28959059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 8942306 - 8942357
Alignment:
| Q |
231 |
aaatgagtttctctcatcaatagaacaaatggattatgatgtgtgttgaaac |
282 |
Q |
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|||||||||| ||||||||||||| ||| ||||| ||||||||||| ||||| |
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| T |
8942306 |
aaatgagtttatctcatcaatagatcaagtggatcatgatgtgtgtagaaac |
8942357 |
T |
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