View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_81 (Length: 306)
Name: NF16177_low_81
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 33 - 267
Target Start/End: Complemental strand, 21056557 - 21056323
Alignment:
| Q |
33 |
gttgtttcttcaaacaaatcctctactcaaattaggcaacagtagaaccaagatcaccccttccattcttgcttaaagtccagttcctgcaaaatttatt |
132 |
Q |
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| T |
21056557 |
gttgtttcttcaaacaaatcctctactcaaattaggcaacagtagaaccaagatcaccccttccattcttgcttaaagtccagttcctgcaaaatttatt |
21056458 |
T |
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| Q |
133 |
tccacggattctgcattttctatccctcaattttattatagtcaaagcagaattctccagataatttcaccaaatcaatagtgcacaatccttgtgcaac |
232 |
Q |
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| T |
21056457 |
tccacggattctgcattttctatccctcaattttattatagtcaaagcagaattctcgagataatttcaccaaatcaatagtgcacaatccttgtgaacc |
21056358 |
T |
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| Q |
233 |
acatgagaatttgacttctatttcattattatata |
267 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
21056357 |
acatgagaatttgacttctatttcattattatata |
21056323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21056603 - 21056567
Alignment:
| Q |
1 |
attcaccttcgagatcttcatttttgcggctagttgt |
37 |
Q |
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| T |
21056603 |
attcaccttcgagatcttcatttttgcggctagttgt |
21056567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 26365383 - 26365585
Alignment:
| Q |
1 |
attcaccttcgagatcttcatttttg--cggctagttgtttcttcaaacaaatcctctactcaaattaggcaacagtagaaccaagatcaccccttccat |
98 |
Q |
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|||||||||| |||||||| ||||| | ||| ||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
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| T |
26365383 |
attcaccttcaagatcttcttttttagtcagcttgttgtctcttcaaccaaatcctctactcaaattaggcaacagttggaccaagatcactccttccat |
26365482 |
T |
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| Q |
99 |
tcttgcttaaagtccagttcctgcaaaatttatttccacggattctgcattttctatccc-tcaattttattatagtcaaagcagaattctccagataat |
197 |
Q |
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||||||||||||| ||||||||||||| || || |||||||||||||||||| | || ||||| || |||||||| |||| |||||||||| |
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| T |
26365483 |
tcttgcttaaagttcagttcctgcaaatttaat---------ttctgcattttctatcccaactatcttattgtattcaaagcaaaattttccagataat |
26365573 |
T |
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| Q |
198 |
ttcaccaaatca |
209 |
Q |
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||||||||||| |
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| T |
26365574 |
atcaccaaatca |
26365585 |
T |
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