View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_84 (Length: 292)
Name: NF16177_low_84
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 33731279 - 33731541
Alignment:
| Q |
12 |
tgagaagaagaacttgttgtttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtac |
111 |
Q |
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| T |
33731279 |
tgagaagaagaacttgttgcttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtac |
33731378 |
T |
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| Q |
112 |
tacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgata |
211 |
Q |
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| T |
33731379 |
tacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgata |
33731478 |
T |
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| Q |
212 |
aggatgaaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttg |
274 |
Q |
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| T |
33731479 |
aggatgaaaaggaggaggaagagtgtgtcttctgctaaacctttcatcaatttgtgaaccttg |
33731541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 33802658 - 33802920
Alignment:
| Q |
12 |
tgagaagaagaacttgttgtttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtac |
111 |
Q |
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| T |
33802658 |
tgagaagaagaacatgttgcttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtac |
33802757 |
T |
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| Q |
112 |
tacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgata |
211 |
Q |
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| T |
33802758 |
tacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgata |
33802857 |
T |
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| Q |
212 |
aggatgaaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttg |
274 |
Q |
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| T |
33802858 |
aggatgaaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttg |
33802920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 78 - 245
Target Start/End: Complemental strand, 6126368 - 6126204
Alignment:
| Q |
78 |
ggagagctattaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtag |
177 |
Q |
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|||| |||||||||||| || ||||||||| ||||||| ||||||| |||| |||| ||||||||| ||| | ||| | ||||||||||||| | | |
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| T |
6126368 |
ggagggctattaatttcgaactgagtagtagcactacttggtcctgcatctatatcagcatcttcatacatcaagaacttatcccaaaatgtttcttgcg |
6126269 |
T |
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| Q |
178 |
gtaaagaagacatgttattgacattgtcttgataaggatgaaaaggaggaggaagagtgcgtcttctg |
245 |
Q |
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| T |
6126268 |
gtaaagaagacgtgtt---gacattgtcttgatgaatatgaaaaggaggaggaagagtgcgtcttctg |
6126204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 6145784 - 6145594
Alignment:
| Q |
78 |
ggagagctattaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtag |
177 |
Q |
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| T |
6145784 |
ggagggctattaatttcggaccgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtttctt--- |
6145688 |
T |
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| Q |
178 |
gtaaagaagacatgttattgacattgtcttgataaggatgaaaaggaggaggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttg |
274 |
Q |
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| T |
6145687 |
gtgatgaagacatgtt---gacattgtcttgatgaagatgaaaaggaggaggaaaagtgtgtcttctgcttgagctttcgtcaacttgtgaaccttg |
6145594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 34283454 - 34283397
Alignment:
| Q |
12 |
tgagaagaagaacttgttgtttctcttgttgctgcagagggatatagaaatgatgcag |
69 |
Q |
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| T |
34283454 |
tgagaagaagaacttgctgctcctcttattgctgcagagggatatagaaatgatgcag |
34283397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 10343368 - 10343426
Alignment:
| Q |
86 |
attaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcat |
144 |
Q |
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| T |
10343368 |
attaatttgagacagagtagtagtactatttggtcctgcgcctacatcaacaacttcat |
10343426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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