View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_85 (Length: 292)
Name: NF16177_low_85
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_85 |
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| [»] scaffold1473 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 14291986 - 14291713
Alignment:
| Q |
3 |
agagagttggatgtgcatgttggtttgaatttctctctactgcattgactcaagttcttcatacactttttggaaagaaaatttgagatgtttgagtaac |
102 |
Q |
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| T |
14291986 |
agagagttggatgtgcatgttggtttgaatttctctctactgcattgactcaagttcttcatatacttttcgaaaagagaacatgagatgtttgagtaac |
14291887 |
T |
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| Q |
103 |
taatgtttacccttgatgttgtcattgtactcatgtttgacttgtgatccaactttagatgttacatttgaataatttagttttatttatgtttgtttta |
202 |
Q |
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| T |
14291886 |
taatgtttacccttgatgttgtcattgtactcatgtttgacttgtgatccaactttagatgttacatttgaataatttagttttatttatgtttgtttta |
14291787 |
T |
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| Q |
203 |
aattggtaataaggtgatggaatggacatgtattttgtcaaaacaataaattacatcttagaaatacttgcatc |
276 |
Q |
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| T |
14291786 |
aattggtaataaggtgatggaatggacatgtattttgtcaaaacaataaattacatcttagaaatacttgcatc |
14291713 |
T |
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Target: scaffold1473 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold1473
Description:
Target: scaffold1473; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 121 - 234
Target Start/End: Original strand, 1 - 114
Alignment:
| Q |
121 |
ttgtcattgtactcatgtttgacttgtgatccaactttagatgttacatttgaataatttagttttatttatgtttgttttaaattggtaataaggtgat |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1 |
ttgtcattgtactcatgtttgacttgtgatccaactttagatgttacatttgaataatttagttttatttatgtttgttttaaattggtaataagatgat |
100 |
T |
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| Q |
221 |
ggaatggacatgta |
234 |
Q |
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| T |
101 |
ggaatggacatgta |
114 |
T |
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