View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16177_low_87 (Length: 288)

Name: NF16177_low_87
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16177_low_87
NF16177_low_87
[»] chr5 (1 HSPs)
chr5 (30-256)||(33953342-33953572)
[»] scaffold0438 (2 HSPs)
scaffold0438 (27-163)||(12645-12781)
scaffold0438 (200-256)||(12591-12647)
[»] chr8 (6 HSPs)
chr8 (27-163)||(26342484-26342620)
chr8 (27-160)||(26295156-26295289)
chr8 (27-160)||(26308413-26308546)
chr8 (200-256)||(26342430-26342486)
chr8 (201-256)||(26295099-26295154)
chr8 (201-256)||(26308356-26308411)
[»] chr3 (9 HSPs)
chr3 (132-201)||(147793-147862)
chr3 (22-127)||(8031709-8031812)
chr3 (136-201)||(1206484-1206549)
chr3 (132-201)||(24103552-24103621)
chr3 (55-136)||(742559-742637)
chr3 (55-136)||(752967-753045)
chr3 (132-199)||(1188884-1188952)
chr3 (57-135)||(7435993-7436068)
chr3 (46-135)||(24103436-24103525)
[»] chr2 (4 HSPs)
chr2 (70-137)||(43865743-43865808)
chr2 (137-184)||(43849635-43849682)
chr2 (50-137)||(43862203-43862287)
chr2 (93-137)||(43849563-43849607)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 33953342 - 33953572
Alignment:
Q  30 atccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcg- 128  Q
    |||||||| | | ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33953342 atccctctaagttgggtcagttacatgaatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcga 33953441  T
Q  129 ---atactttgaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagttgtccaaagagtgcacgagctggt 225  Q
       |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33953442 tcgatactttgaaaaacttttgtatccttcaccatgttttttctgtagcccaacatcttgtattcacctatgcagttgtccaaagagtgcacgagctggt 33953541  T
Q  226 ttcaattgaaagaaattacacactgttaagt 256  Q
    |||||||||||||||||||||||||||||||    
T  33953542 ttcaattgaaagaaattacacactgttaagt 33953572  T

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Target: scaffold0438 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 12781 - 12645
Alignment:
Q  27 catatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 126  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12781 catatccctctaagtcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 12682  T
Q  127 cgatactttgaaaaacttctgtatccttcaccatgtt 163  Q
    | ||||||||||||||||||||||| |||||||||||    
T  12681 ccatactttgaaaaacttctgtatcgttcaccatgtt 12645  T

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Target: scaffold0438; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 12647 - 12591
Alignment:
Q  200 gttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 256  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  12647 gttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 12591  T

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Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 26342620 - 26342484
Alignment:
Q  27 catatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 126  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26342620 catatccctctaagtcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 26342521  T
Q  127 cgatactttgaaaaacttctgtatccttcaccatgtt 163  Q
    | ||||||||||||||||||||||| |||||||||||    
T  26342520 ccatactttgaaaaacttctgtatcgttcaccatgtt 26342484  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 26295289 - 26295156
Alignment:
Q  27 catatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 126  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26295289 catatccctctaagtcgggtcggttacgtggatcataagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 26295190  T
Q  127 cgatactttgaaaaacttctgtatccttcaccat 160  Q
    | ||||||||||||||||| ||||||||||||||    
T  26295189 ccatactttgaaaaacttcggtatccttcaccat 26295156  T

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Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 26308546 - 26308413
Alignment:
Q  27 catatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 126  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26308546 catatccctctaagtcgggtcggttacgtggatcataagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcat 26308447  T
Q  127 cgatactttgaaaaacttctgtatccttcaccat 160  Q
    | ||||||||||||||||| ||||||||||||||    
T  26308446 ccatactttgaaaaacttcggtatccttcaccat 26308413  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 26342486 - 26342430
Alignment:
Q  200 gttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 256  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26342486 gttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 26342430  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 26295154 - 26295099
Alignment:
Q  201 ttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 256  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26295154 ttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 26295099  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 26308411 - 26308356
Alignment:
Q  201 ttgtccaaagagtgcacgagctggtttcaattgaaagaaattacacactgttaagt 256  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26308411 ttgtccaaagagacgacgagctggtttcaattgaaagaaattacacactgttaagt 26308356  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 147862 - 147793
Alignment:
Q  132 ctttgaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagt 201  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  147862 ctttgaataacttttgtatccttcaccatgttttttctgcaacccaacatcctgaattcacctatgcagt 147793  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 8031709 - 8031812
Alignment:
Q  22 caaaccatatccctctcaatcgggtcggttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataa 121  Q
    |||||||||| ||| | | |||||||||| || |||||||||||||| ||||||||||||||| |||||  | || ||||||||||| ||||||||| ||    
T  8031709 caaaccatattcctttaagtcgggtcggtgacatggatcaaaagacatccataaataagtctaacaagt--aaaattaagcaaaagtattcttgtaacaa 8031806  T
Q  122 tgcatc 127  Q
    ||||||    
T  8031807 tgcatc 8031812  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 1206549 - 1206484
Alignment:
Q  136 gaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagt 201  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||    
T  1206549 gaaaaacttttgtatccttcaccatgttttttctgcaaccgaacatcatgtgttcacctatgcagt 1206484  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 24103552 - 24103621
Alignment:
Q  132 ctttgaaaaacttctgtatccttcaccatgttttttctgcagcccaacatcttgtattcacctatgcagt 201  Q
    ||||||||||||| ||||||||||||||||||||||||||| || |||| | ||| ||||||||||||||    
T  24103552 ctttgaaaaacttttgtatccttcaccatgttttttctgcaacctaacaacctgtgttcacctatgcagt 24103621  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 742559 - 742637
Alignment:
Q  55 tggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttg 136  Q
    |||||||||||||||| || |||||||||||| ||||||  ||| ||||||||||||||||| ||||| |||| ||||||||    
T  742559 tggatcaaaagacacc-atgaataagtctagcgagtaga--aatgagcaaaagtgttcttgttataatccatcaatactttg 742637  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 752967 - 753045
Alignment:
Q  55 tggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttg 136  Q
    |||||||||||||||| || |||||||||||| ||||||  ||| ||||||||||||||||| ||||| |||| ||||||||    
T  752967 tggatcaaaagacacc-atgaataagtctagcgagtaga--aatgagcaaaagtgttcttgttataatccatcaatactttg 753045  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 1188952 - 1188884
Alignment:
Q  132 ctttgaaaaacttctgtatccttcaccatgtt-ttttctgcagcccaacatcttgtattcacctatgca 199  Q
    ||||||||||||| |||||||||||||||||| ||||||||| |  |||||| ||| ||||||||||||    
T  1188952 ctttgaaaaacttttgtatccttcaccatgtttttttctgcaactgaacatcctgtgttcacctatgca 1188884  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 7435993 - 7436068
Alignment:
Q  57 gatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatacttt 135  Q
    |||||||||||||  || |||||||||||||||||||  ||| ||||||||||||||||| ||||| |||| |||||||    
T  7435993 gatcaaaagacacg-atgaataagtctagcaagtaga--aatcagcaaaagtgttcttgttataatccatcaatacttt 7436068  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 24103436 - 24103525
Alignment:
Q  46 tcggttacgtggatcaaaagacaccc---ataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatacttt 135  Q
    |||||||| ||||||||| ||||||    |||| ||||||||||||| |||  |||||| |||||||||||||| ||||||||| ||||||||    
T  24103436 tcggttacatggatcaaatgacaccttaaataagtaagtctagcaagaaga--aataaggaaaagtgttcttgttataatgcat-gatacttt 24103525  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 43865743 - 43865808
Alignment:
Q  70 ccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttga 137  Q
    |||| |||||||||||||||||||  ||| ||||||||||||||||| |||||||||| |||||||||    
T  43865743 ccatgaataagtctagcaagtaga--aatgagcaaaagtgttcttgttataatgcatccatactttga 43865808  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 43849635 - 43849682
Alignment:
Q  137 aaaaacttctgtatccttcaccatgttttttctgcagcccaacatctt 184  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||    
T  43849635 aaaaacttatgtatccttcaccatgttttttctgcaatccaacatctt 43849682  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 43862203 - 43862287
Alignment:
Q  50 ttacgtggatcaaaagacacccataaataagtctagcaagtagagaaataagcaaaagtgttcttgtaataatgcatcgatactttga 137  Q
    |||| ||||||||| |||||| ||| |||||| | |||||||||  ||| ||||||||||||||||| |||||| ||| |||||||||    
T  43862203 ttacatggatcaaacgacacctatatataagttt-gcaagtaga--aatgagcaaaagtgttcttgttataatggatcaatactttga 43862287  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 43849563 - 43849607
Alignment:
Q  93 agaaataagcaaaagtgttcttgtaataatgcatcgatactttga 137  Q
    |||||| ||||||||||||||||| |||||| ||| |||||||||    
T  43849563 agaaatgagcaaaagtgttcttgttataatgtatcaatactttga 43849607  T

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