View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16177_low_89 (Length: 285)
Name: NF16177_low_89
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_89 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 38921707 - 38921939
Alignment:
| Q |
1 |
ctcatgctcaccaacacctatgcctagaaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatcccacttctaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38921707 |
ctcatgatcaccaacacctatgcccagaagtgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaattccacttctaa |
38921806 |
T |
|
| Q |
101 |
caatatcacttaggtgcagctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38921807 |
caatatcacttaggtgcagctgtttggattcggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactga |
38921906 |
T |
|
| Q |
201 |
tttttgttgcccgctttttataaggtgcagctg |
233 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |
|
|
| T |
38921907 |
tttttgttgctcgcttttcataaggtgcagctg |
38921939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 35968504 - 35968322
Alignment:
| Q |
54 |
caaaattgattcactcatgctcaaactttacaaaatcccacttctaacaatatcacttaggtgcagctgtttggattgggggaggtacacaaactgtcca |
153 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35968504 |
caaacttgattcactcatgctcaaactttacaaaatcccacttctaacaatatcacttaggtgcagctgtctggattgggggaggtacacaaactgtcca |
35968405 |
T |
|
| Q |
154 |
actgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttttgttgcccgctttttataaggtgcagctgcag |
236 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
35968404 |
actgtgtggcggtgtttagcctacagttggttgtgtttgtttactgatttttgttgctcgcttttcataaggtgcagctgcag |
35968322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41739874 - 41740109
Alignment:
| Q |
1 |
ctcatgctcaccaacacctatgcctagaaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatcccacttctaa |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41739874 |
ctcatgctcaccagcacctatgcccagaagtgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatctcacttctaa |
41739973 |
T |
|
| Q |
101 |
caatatcacttaggtgcagctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactga |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41739974 |
caatatcacttaggtgcagctgtctggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacaattggttgtgtttgtttactga |
41740073 |
T |
|
| Q |
201 |
tttttgttgcccgctttttataaggtgcagctgcag |
236 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
41740074 |
tttttgttgctcgcttttcataaggtgcagctgcag |
41740109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 38516924 - 38516954
Alignment:
| Q |
34 |
tcatattcaaaatcaaaattcaaaattgatt |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38516924 |
tcatattcaaaatcaaaattcaaaattgatt |
38516954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 45291680 - 45291650
Alignment:
| Q |
34 |
tcatattcaaaatcaaaattcaaaattgatt |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45291680 |
tcatattcaaaatcaaaattcaaaattgatt |
45291650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30830178 - 30830407
Alignment:
| Q |
1 |
ctcatgctcaccaacacctatgcctagaaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatcccacttctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30830178 |
ctcatgctcaccaacacctatgcccagaagtgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatctcacttctaa |
30830277 |
T |
|
| Q |
101 |
caatatcacttaggtgcagctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactga |
200 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30830278 |
caatattacttaggtgcagctgtctggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactga |
30830377 |
T |
|
| Q |
201 |
tttttgttgcccgctttttataaggtgcag |
230 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |
|
|
| T |
30830378 |
tttttgttgctcgcttttcataaggtgcag |
30830407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31409625 - 31409688
Alignment:
| Q |
1 |
ctcatgctcaccaacacctatgcctagaaatgatcatattcaaaatcaaaattcaaaattgatt |
64 |
Q |
| |
|
|||||||||| |||||||| | || ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31409625 |
ctcatgctcaacaacacctctacccagaaatgatgatattcaaaatcaaaattcaaaattgatt |
31409688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 35063439 - 35063204
Alignment:
| Q |
1 |
ctcatgctcaccaacacctatgcctagaaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttacaaaatcccacttctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35063439 |
ctcatgctcaccaacacctatgcccataaatgatcatattcaaaatcaaaattcaaaattgattcactcatgctcaaactttataaaatcccacttctaa |
35063340 |
T |
|
| Q |
101 |
caatatcacttaggtgcagctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactga |
200 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35063339 |
caatatcacttaggtgtagttgtttggattgggggaggtacacaaactgtccaactgtgtggccgtgtttagcctacagttggttgtgtttgtttactga |
35063240 |
T |
|
| Q |
201 |
tttttgttgcccgctttttataaggtgcagctgcag |
236 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
35063239 |
tttttgttgctcgcttttcataaggtgtagctgcag |
35063204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 14512116 - 14512054
Alignment:
| Q |
142 |
acaaactgtccaactgtgtggcagtgtttagcctacagttggttgtgtttgtttactgatttt |
204 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||| | |||||||||| |||||||||||| |||| |
|
|
| T |
14512116 |
acaaacagcccaactgtgcggcagtttttagcgttcagttggttgggtttgtttactggtttt |
14512054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 4754648 - 4754488
Alignment:
| Q |
76 |
aaactttacaaaatcccacttctaacaatatcacttaggtgcagctgtttggattgggggaggtacacaaactgtccaactgtgtggcagtgtttagcct |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||| |||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
4754648 |
aaactttacaaaatcccacttctaacaatttcactcaggggcagctgtctgaattgggggaggtaaacaaactgtccaactgtgcggcagtgtttagcct |
4754549 |
T |
|
| Q |
176 |
acagttggttgtgtttgtttactgatttttgttgcccgctttttataaggtgcagctgcag |
236 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
4754548 |
acagttggttgtgtttgtttactgatttctgttgcccgtttttcataaggtgcagctgcag |
4754488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19802027 - 19802090
Alignment:
| Q |
1 |
ctcatgctcaccaacacctatgcctagaaatgatcatattcaaaatcaaaattcaaaattgatt |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
19802027 |
ctcatgctcaccaacacctatgcctagaaattatcatattcaaaatctaaattcgaaattgatt |
19802090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 9448493 - 9448463
Alignment:
| Q |
34 |
tcatattcaaaatcaaaattcaaaattgatt |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9448493 |
tcatattcaaaatcaaaattcaaaattgatt |
9448463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University