View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_9 (Length: 584)
Name: NF16177_low_9
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_9 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 16 - 584
Target Start/End: Original strand, 40121038 - 40121623
Alignment:
| Q |
16 |
caatttcttctcattcctcagctgcctcacacacttaggtcgttagccttctttgaaattcaattccacactcatcaattattattgtcctcatatttat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40121038 |
caatttcttctcattcctcagctgcctcacacacttaggtcgttagcctttgttgaaattcaattccacactcatcaattattattgtcctcatatttat |
40121137 |
T |
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| Q |
116 |
tgcccatacacttacaacattaatattcgtcatatctata----cctaaatgtatatctcaacataacattaagtatnnnnnnnnnnnn----------c |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
40121138 |
tgcccatacacttacaacattaatattcgtcatatctatatatacctaaatgtatatctcaacataacattaagtataaaaaataaaaataaaaataaac |
40121237 |
T |
|
| Q |
202 |
actattatacattccaccgtcattagaaaacaaaaacatatataaaacagaaacatggagtcttattctggctcatatt---cttcatctaaatcttcat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40121238 |
actattatacattccaccgtcattagaaaacaaaaacatatataaaacagaaacatggagtcttattctggctcatattattcttcatctaaatcttcat |
40121337 |
T |
|
| Q |
299 |
acatatccaaaaacactaagaaaccaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggcttcactcagtaagaaagtcaccaac |
398 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40121338 |
acatatccaaaaacactaagaaaccaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttgtcttcactcagtaagaaagtcaccaac |
40121437 |
T |
|
| Q |
399 |
aaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctataaacttcaaagaacttgttcagtcc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40121438 |
aaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatacaaagtggatccaataaacttcaaagaacttgttcagtcc |
40121537 |
T |
|
| Q |
499 |
ctcacttgtgcacctcagttcatgcctccacagcctcatcacaaccttgaccttcaaagcaccacagaccataccactgctaagaa |
584 |
Q |
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| T |
40121538 |
ctcacttgtgcacctcagttcatgcctccacagcctcatcacaaccttgaccttcaaagcaccacagaccataccactgctaagaa |
40121623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 256 - 574
Target Start/End: Original strand, 40092472 - 40092790
Alignment:
| Q |
256 |
atggagtcttattctggctcatattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaagggatcaatgaaaaatgaatacccttttg |
355 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||| |
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| T |
40092472 |
atggaatcttattctagctcatattcttcatctaaatcttcatacatatcccaaaacacgaagaaagcaaatggatcaatgaaaaatgaatacccttttg |
40092571 |
T |
|
| Q |
356 |
aatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagt |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40092572 |
aatccaaatattcttggcttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctgccaaagt |
40092671 |
T |
|
| Q |
456 |
atacaaagtggatcctataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcatgcctccacagcctcatcacaaccttgaccttcaa |
555 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||||| |
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| T |
40092672 |
atacaaagtggatccaataaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcataccttcacagcctcatcacaaacttgatcttcaa |
40092771 |
T |
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| Q |
556 |
agcaccacagaccatacca |
574 |
Q |
| |
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||||||||| ||||||||| |
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| T |
40092772 |
agcaccacaaaccatacca |
40092790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 274 - 574
Target Start/End: Original strand, 40124962 - 40125262
Alignment:
| Q |
274 |
tcatattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaagggatcaatgaaaaatgaatacccttttgaatccaaatattcttggc |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||| | || | | |||||||||| |
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| T |
40124962 |
tcatattcttcatctaaatcttcatacatatccaaaaacactaagaaaccaaatggatcaattaaacatgaatgcccttgtcaaactcattattcttggc |
40125061 |
T |
|
| Q |
374 |
ttcactcagtaagaaagtcaccaacaaagacatggaataagaaggcaccaatagcaccaatggcaccaacacctatcaaagtatacaaagtggatcctat |
473 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
40125062 |
ttcactcagtaagaaaatcacctgtaaagacatggaataagaagttaccaatagcaccaatggcaccaacacctgccaaagtatacaaagtggatccaat |
40125161 |
T |
|
| Q |
474 |
aaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcatgcctccacagcctcatcacaaccttgaccttcaaagcaccacagaccatacc |
573 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
40125162 |
aaacttcaaagaacttgttcagtccctcacttgtgcacctcagttcataccttcacagcctcatcacaaacttgatcttcaaagcaccacaaaccatacc |
40125261 |
T |
|
| Q |
574 |
a |
574 |
Q |
| |
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| |
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| T |
40125262 |
a |
40125262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 40124760 - 40124835
Alignment:
| Q |
50 |
ttaggtcgttagccttctttgaaattcaattccacactcatcaatta-ttattgtcctcatatttattgcccatac |
124 |
Q |
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|||||||||||||||| ||||||||||| ||||||||| | ||||| ||||| | ||||||||||||| ||||| |
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| T |
40124760 |
ttaggtcgttagcctttgttgaaattcaactccacactcttgaattatttatttccttcatatttattgctcatac |
40124835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 40092254 - 40092306
Alignment:
| Q |
47 |
cacttaggtcgttagccttctttgaaattcaattccacactcatcaattatta |
99 |
Q |
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|||||||||||| |||||| |||||||| ||||||||| || |||||||||| |
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| T |
40092254 |
cacttaggtcgtcagccttaattgaaatttaattccacaatcttcaattatta |
40092306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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