View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_90 (Length: 279)
Name: NF16177_low_90
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 46951640 - 46951883
Alignment:
| Q |
17 |
agatcaaacaatgacttaacaactgatggaacatcaattggtgtcatgatatcagatactgttgcatccaaagttgcatggatgaatctagctccggagt |
116 |
Q |
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| T |
46951640 |
agatcaaacaatgacttaacaactgatggaacatcaattggtgtcatgatatcagatactgttgcatccaaagttgcatggatgaatctagctccggagt |
46951739 |
T |
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| Q |
117 |
tattgttactgcaatcaacgaaaatattataagtgggagggtcttgggatttttgtgtaacaagacgacctgataaaggatagaaatggaataaagcaag |
216 |
Q |
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| T |
46951740 |
tattgttactgcaatcaacgaaaatattataagtgggagggtcttgggatttttgtgtaacaagacgacctgataaaggatagaaatgaaataaagcaag |
46951839 |
T |
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| Q |
217 |
agagagggagtgtttgagtttctctaaaagattatgaatgaaat |
260 |
Q |
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| T |
46951840 |
agagagggagtgtttgagtttctctaaaagattatgaatgaaat |
46951883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 46956045 - 46956221
Alignment:
| Q |
64 |
gatatcagatactgttgcatccaaagttgcatggatgaatctagctccggagttattgttactgcaatcaacgaaaatattataagtgggagggtcttgg |
163 |
Q |
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| T |
46956045 |
gatatcatatattgttgcatccagagttgcatagatgaatctagctctggtgttatcgttactgcaatcaacaaaaatggtataagagggagggtcttga |
46956144 |
T |
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| Q |
164 |
gatttttgtgtaacaagacgacctgataaaggatagaaatggaataaagcaagagagagggagtgtttgagtttctc |
240 |
Q |
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| T |
46956145 |
gttttgtgggtgacaaggcggccagaaagaggatagaaatggaaaagagcatgagagaaggagtgtttgagcttctc |
46956221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 46958908 - 46959043
Alignment:
| Q |
92 |
gcatggatgaatctagctccggagttattgttactgcaatcaacgaaaatattataagtgggagggtcttgggatttttgtgtaacaagacgacctgata |
191 |
Q |
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| T |
46958908 |
gcatagatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtgttgagttttgtgggtgacaaggcggccagaaa |
46959007 |
T |
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| Q |
192 |
aaggatagaaatggaataaagcaagagagagggagt |
227 |
Q |
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| T |
46959008 |
gaggatagaaatggaaaagagcatgagagagggagt |
46959043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 46996030 - 46996114
Alignment:
| Q |
153 |
gagggtcttgggatttttgtgtaacaagacgacctgataaaggatagaaatggaataaagcaagagagagggagtgtttgagttt |
237 |
Q |
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| T |
46996030 |
gaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtttgagttt |
46996114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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