View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16177_low_96 (Length: 265)
Name: NF16177_low_96
Description: NF16177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16177_low_96 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 130 - 249
Target Start/End: Original strand, 44271950 - 44272069
Alignment:
| Q |
130 |
agcctgttttgacaaaacattagataactttgtgtacaacaacataaaaccaatagccataggaagattcacccatgttttcaaaaaaggtataatctca |
229 |
Q |
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| T |
44271950 |
agcctgttttgacaaaacattagataactttgtgtacaacaacataaaaccaatagccataggaagattcacccatgttttcaaaaaaggtataatctca |
44272049 |
T |
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| Q |
230 |
gcactacttcctctagcagt |
249 |
Q |
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|||||||||||||||||||| |
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| T |
44272050 |
gcactacttcctctagcagt |
44272069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 44271834 - 44271888
Alignment:
| Q |
14 |
atattaagaaggttatcagcaaatgcctgagggtgaatatagttgctaagaggat |
68 |
Q |
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| T |
44271834 |
atattaagaaggttatcagcaaatgcctgagggtgaatatagttgctaagaggat |
44271888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 2808523 - 2808416
Alignment:
| Q |
134 |
tgttttgacaaaacattagataactttgtgtacaacaacataaaaccaatagccataggaagattcacccatgttttcaaaaaaggtataatctcagcac |
233 |
Q |
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|||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2808523 |
tgttttgacaaaacattagacagttttgtatacaacaacataaaaccaatagccataggaagattcacccatgttttcaaaaatggtataatctcagcac |
2808424 |
T |
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| Q |
234 |
tacttcct |
241 |
Q |
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|||||||| |
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| T |
2808423 |
tacttcct |
2808416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 8739728 - 8739835
Alignment:
| Q |
134 |
tgttttgacaaaacattagataactttgtgtacaacaacataaaaccaatagccataggaagattcacccatgttttcaaaaaaggtataatctcagcac |
233 |
Q |
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|||||||||||||||||| | ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8739728 |
tgttttgacaaaacattaaacaactttgcatacaataacataaaaccaatagccctaggaagattcacccatgttttcaaaaatggtataatctcagcac |
8739827 |
T |
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| Q |
234 |
tacttcct |
241 |
Q |
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|||||||| |
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| T |
8739828 |
tacttcct |
8739835 |
T |
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