View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16178_high_1 (Length: 506)
Name: NF16178_high_1
Description: NF16178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16178_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 491
Target Start/End: Original strand, 3713820 - 3714301
Alignment:
| Q |
8 |
ttttataagatttgatgttgtcttttgaattacgaaagtcaaatttttaccattgaagtaacaccttatggacactgtcaatttaaacatgtaaaaaatt |
107 |
Q |
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| T |
3713820 |
ttttatgagatttgatgttgtcttttgagttacaaaagtcaaatttttactattgaagtaacacctcatggacactgtcaattcaaacatgtaaaaaatt |
3713919 |
T |
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| Q |
108 |
cctaaatcagacaagtggttgtttgtttctcatatctcattttcttgcccttacattacataatttaagataggtagagaaaacatttaacccaacagta |
207 |
Q |
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| T |
3713920 |
cctaaatcagacaagtggttgttt----ctcatatctcattttcttgcccttagattacataatttaagataggtagagaa--catttaacccaacagta |
3714013 |
T |
|
| Q |
208 |
ttgcgccattgtcttatgaaaatagcaacagatgggtccaaatgtgatgtgg----gaggtggggacaagagattttggggacaatagagcatggctaaa |
303 |
Q |
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| T |
3714014 |
ttgcgccattgtcttatgaaaatagcaacagatgggtccaaatgtgatgtgggtgggaggtggggacaagagattttggggacaatagagcatggctaaa |
3714113 |
T |
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| Q |
304 |
ccgtcaccaaaggagcatgccacatggaacatacaccatatgccatctgagggagcggattgccacaaaaccataggtttcacataagcgacaaatatca |
403 |
Q |
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| T |
3714114 |
ccgtcaccaaaggagcatgccacatggaacatacaccatatgccatctgagggagcggattgccacaaaaccataggtttcacataagcgacaaatatca |
3714213 |
T |
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| Q |
404 |
tttcaacaaggttccatgtaacatgacatgacacacccttcatatcccactgtctctgtcagaaattagacgctagaaagtaagatgt |
491 |
Q |
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| T |
3714214 |
tttcaacaaggttccatgtaacatgacatgacacacccttcatatcccactgtctctgtcagaaattagacgctagaaagtaagatgt |
3714301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 130 - 373
Target Start/End: Complemental strand, 17032712 - 17032469
Alignment:
| Q |
130 |
ttgtttctcatatctcattttcttgcccttacattacataatttaagataggtagagaaaacatttaacccaacagtattgcgccattgtcttatgaaaa |
229 |
Q |
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| T |
17032712 |
ttgttcctcatatcccgttttcttgcccttacattacataaatcaagataggtggagaa--catttaacccaatagtattgcgccattgtattatgaaag |
17032615 |
T |
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| Q |
230 |
tagcaacagatgggtccaaatgtgatgtgggaggtggggacaagagattttggggacaatagagcatggcta-aaccgtcaccaaaggagcatgccacat |
328 |
Q |
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| T |
17032614 |
tagcaacatatggttcctaatgtgatgtgggaggtgtggacaagagattttggggacagcaaagcaaggctagaaccgtcaccaaaggagcatgccacat |
17032515 |
T |
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| Q |
329 |
ggaacatacaccata-tgccatctgagggagcggattgccacaaaa |
373 |
Q |
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| T |
17032514 |
ggaacatacaccatattgccaactgaggtagcggattaccacaaaa |
17032469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 456
Target Start/End: Complemental strand, 17032351 - 17032312
Alignment:
| Q |
417 |
ccatgtaacatgacatgacacacccttcatatcccactgt |
456 |
Q |
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| T |
17032351 |
ccatgtaacatgacaagacacacccttcataacccactgt |
17032312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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