View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16178_high_5 (Length: 348)
Name: NF16178_high_5
Description: NF16178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16178_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 332
Target Start/End: Original strand, 19336351 - 19336669
Alignment:
| Q |
5 |
tatgaggtttggaattttgaagccaaaagcaaaagggaagctcaagtgaaacttaattatttatttgtttttaaaccaaaatgaaaggaatcgaagcttg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19336351 |
tatgaggtttggaattttgaagccaaaagcaaaagggaagctcaagtgaaacttaattatttatttgtttttaaaccaaaat---------cgaagcttg |
19336441 |
T |
|
| Q |
105 |
actagaacgatatttaggtaacaagttcattccttgactactgataaaaatctgggaatcttggccactttggtgaactgcaaagatgaagtttcttcaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19336442 |
actagaacgatatttaggtaacaagttcattccttgactactgataaacatctgggaatcttggccactttggtgaactgcaaagatgaagtttcgtcaa |
19336541 |
T |
|
| Q |
205 |
attggtcaagaaatttttccaatctgctcagagctattttttattttatcaattttggtactgttaaaatagcctcagaatgagagatactcttcttcaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19336542 |
attggtcaagaaatttttccaatctgctcagagctatttttcattttatcaattttggtactgttaaaatagcctcagaatgagagatactcttcttcaa |
19336641 |
T |
|
| Q |
305 |
ctggaatgaatttatgaagaattcaaaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
19336642 |
ctggaatgaatttatgaagaattcaaaa |
19336669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 19427159 - 19427262
Alignment:
| Q |
191 |
tgaagtttcttcaaattggtcaagaaatttttccaatctgctcagagctattttttattttatcaattttggtactgttaaaatagcctcagaatgagag |
290 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
19427159 |
tgaagtttcatcaaattgatcaagaaatttttccatgctgctcagagatattttatattttatcaattttggtacagttaaaacagcctcaaaatgagag |
19427258 |
T |
|
| Q |
291 |
atac |
294 |
Q |
| |
|
|||| |
|
|
| T |
19427259 |
atac |
19427262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 19426944 - 19427034
Alignment:
| Q |
6 |
atgaggtttggaattttgaagccaaaagcaaaagggaagctcaagtgaaacttaattatttatttgtttttaaaccaaaatgaaaggaatc |
96 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||| || || ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
19426944 |
atgaggtttgaaattttgaagccaaaatcaaaagggaagctcaaatggaagttaattatttatttgtttttaaaccgaacagaaaggaatc |
19427034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 18150144 - 18150220
Alignment:
| Q |
5 |
tatgaggtttggaattttgaagccaaaagcaaaagggaagctcaagtgaaacttaattatttatttgtttttaaacc |
81 |
Q |
| |
|
||||| |||| ||| |||| |||||||| || ||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
18150144 |
tatgaagttttgaactttggagccaaaaccataagggaagctcaaatgaagcttaattatttatttgtttttaaacc |
18150220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 19463821 - 19463883
Alignment:
| Q |
16 |
gaattttgaagccaaaagcaaaagggaagctcaagtgaaactta-attatttatttgtttttaaa |
79 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
19463821 |
gaattttgaagccaaaagcaaaagg--agatcaagtgaaacttatattatttatttgtttttaaa |
19463883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University