View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16178_high_8 (Length: 312)
Name: NF16178_high_8
Description: NF16178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16178_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 308
Target Start/End: Complemental strand, 9690401 - 9690116
Alignment:
| Q |
23 |
taacaatatcattttatttttattattgagtctcttacaatcaatgatttcaaatattgcagatggagaaattgctgagttgaaagaagaaaatgaaagt |
122 |
Q |
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| T |
9690401 |
taacgatatcattttatttttattattgagtctcttacaatcaatgatttcaaatattgcagatggagaaattgctgagttgaaagaagaaaatgaaagt |
9690302 |
T |
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| Q |
123 |
tatggatggttggaagaaatagagatgccagaaaactctcaaatggatgggattgaatatttgggtcctccaattatagagacttccctataagatatat |
222 |
Q |
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| T |
9690301 |
tatggatggttggaagaaatagagatgccagaaaactctcaaatggatgggattgaatatttgggtcctccaattatagagacttccctataagatgtat |
9690202 |
T |
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| Q |
223 |
tccatagcacacacacttaggtctctttaattactatgcacattacaaacatataaacacattgcatttgttggtttcttttctct |
308 |
Q |
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| T |
9690201 |
tccatagcacacacacttaggtctctttaattactatgcacaatacaaacatataaacacattgcatttgttggtttcttttctct |
9690116 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 33529286 - 33529375
Alignment:
| Q |
93 |
attgctgagttgaaagaagaaaatgaaagttatggatggttggaagaaatagagatgccagaaaactctcaaatggatgggattgaatat |
182 |
Q |
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| T |
33529286 |
attggtgaggtgaaagacaaagatgatagttatgggttgttagaagaaattgatatgccagaaaattgtcaaatggatggaattgaatat |
33529375 |
T |
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