View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16178_high_9 (Length: 302)

Name: NF16178_high_9
Description: NF16178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16178_high_9
NF16178_high_9
[»] scaffold0536 (2 HSPs)
scaffold0536 (1-283)||(6480-6762)
scaffold0536 (40-283)||(10462-10705)
[»] chr4 (6 HSPs)
chr4 (41-283)||(48912314-48912556)
chr4 (26-283)||(48958097-48958354)
chr4 (26-283)||(48965282-48965536)
chr4 (49-283)||(48961267-48961503)
chr4 (40-154)||(48974085-48974199)
chr4 (82-125)||(48951252-48951295)
[»] chr8 (1 HSPs)
chr8 (6-283)||(12641450-12641727)
[»] chr6 (2 HSPs)
chr6 (49-270)||(12590151-12590375)
chr6 (61-281)||(12483435-12483658)
[»] chr2 (3 HSPs)
chr2 (46-283)||(13448336-13448570)
chr2 (64-278)||(13440191-13440402)
chr2 (31-283)||(13454792-13455041)
[»] chr7 (1 HSPs)
chr7 (26-283)||(3417499-3417753)
[»] chr5 (2 HSPs)
chr5 (87-283)||(12540699-12540892)
chr5 (177-283)||(28385438-28385541)


Alignment Details
Target: scaffold0536 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 6762 - 6480
Alignment:
Q  1 gaactccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6762 gaactccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatca 6663  T
Q  101 tcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6662 tcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagc 6563  T
Q  201 ccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctctt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6562 ccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctctt 6480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 283
Target Start/End: Complemental strand, 10705 - 10462
Alignment:
Q  40 cgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattcc 139  Q
    ||||| || ||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  10705 cgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattcc 10606  T
Q  140 acccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatt 239  Q
    |||||||||| |||||||||||||||||| |  ||||||| | ||||||||| || || ||||||||| ||||||||||||||||||||||| | |||      
T  10605 acccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttctttgcaataac 10506  T
Q  240 tctctcttcgaatccctttggcaaccattttcctttctcctctt 283  Q
    ||| ||||| ||||| || || | ||||||| ||||||||||||    
T  10505 tctttcttcaaatcctttcggtagccatttttctttctcctctt 10462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 41 - 283
Target Start/End: Complemental strand, 48912556 - 48912314
Alignment:
Q  41 gcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattcca 140  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  48912556 gcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattcca 48912457  T
Q  141 cccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatattt 240  Q
    ||||||||| |||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||| ||    
T  48912456 cccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataatt 48912357  T
Q  241 ctctcttcgaatccctttggcaaccattttcctttctcctctt 283  Q
    |||||||| || |||||||||||||||||| ||||||||||||    
T  48912356 ctctcttcaaacccctttggcaaccatttttctttctcctctt 48912314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 26 - 283
Target Start/End: Original strand, 48958097 - 48958354
Alignment:
Q  26 ccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctc 125  Q
    |||||||||||| |||||| |  ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||||||||    
T  48958097 ccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctc 48958196  T
Q  126 aacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttc 225  Q
     |||||||| |||||||| ||||| |||||||| |||||||| ||  ||||||||| ||||| ||||||||| ||||| |||||||| |||||||| |||    
T  48958197 cacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttc 48958296  T
Q  226 ttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctctt 283  Q
    |||||||| || ||||||||||||||||| || |||||||| ||||||||||||||||    
T  48958297 ttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctctt 48958354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 283
Target Start/End: Original strand, 48965282 - 48965536
Alignment:
Q  26 ccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctc 125  Q
    |||| ||||| | |||||| | ||||||||  ||||| ||||| ||||||||||| ||    ||||| || |||||||||||||| |||| |||||||||    
T  48965282 ccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctc 48965381  T
Q  126 aacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttc 225  Q
     || ||||| ||||| |||||||| |||||||| |||||||||||   |||||||| ||||| ||| || ||||||||||||||||||||||||||   |    
T  48965382 cactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc---c 48965478  T
Q  226 ttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctctt 283  Q
    |||||||| || ||||||||||||||||||||||| ||||| |||   ||||||||||    
T  48965479 ttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctctt 48965536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 48961267 - 48961503
Alignment:
Q  49 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaa--ttccacccaca 146  Q
    ||||||||||| || ||||| ||||||||||| || || ||||| || ||||| || | |||||||||| |||||||||  |||||   |||||||| ||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgca 48961366  T
Q  147 atgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctct 246  Q
    ||||||||||||| ||||||| ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | || |||||||||    
T  48961367 atgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctct 48961466  T
Q  247 tcgaatccctttggcaaccattttcctttctcctctt 283  Q
    || ||||| || |||||||| ||  ||||||||||||    
T  48961467 tcaaatcctttcggcaaccacttgtctttctcctctt 48961503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 48974085 - 48974199
Alignment:
Q  40 cgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattcc 139  Q
    |||||||| ||||||||||| || ||||| ||||||||  | ||||| |||||||||||||| ||||||||||||||||| || || || ||||| ||||    
T  48974085 cgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggtggagttcc 48974184  T
Q  140 acccacaatgcgtca 154  Q
    |||| ||||| ||||    
T  48974185 acccgcaatgtgtca 48974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 48951252 - 48951295
Alignment:
Q  82 tgcaccggccacgtgatcatcggaacccctgcactaacagcctc 125  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  48951252 tgcaccggccacgtgatcatcggaacccctacactaatagcctc 48951295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 283
Target Start/End: Complemental strand, 12641727 - 12641450
Alignment:
Q  6 ccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcgga 105  Q
    |||||| | ||| |||||| |||||||||| | ||||||    ||||||| ||| ||||| || || |||||||| ||||| |||||||||||||| |||    
T  12641727 ccactctgttgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattgga 12641628  T
Q  106 acccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaac 205  Q
    | |||||||||||||||||| ||   ||| ||| |||| ||||||||||| || |||||||||||   |||||| |||||||| |||||||| |||||      
T  12641627 atccctgcactaacagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccact 12641528  T
Q  206 ccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctctt 283  Q
    ||||||| || ||||| ||||| ||| | | |||||||||||||||||| || |||||||| ||| ||||||||||||    
T  12641527 ccctaatgataaaacctttcttattttcaacatttctctcttcgaatcctttaggcaaccacttttctttctcctctt 12641450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 49 - 270
Target Start/End: Complemental strand, 12590375 - 12590151
Alignment:
Q  49 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 148  Q
    ||||||||||| ||||||||||| ||||| || | ||  ||||| |||||||||||||  || |||||||| ||||| ||   ||||||||| |||||||    
T  12590375 gttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaat 12590276  T
Q  149 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttcttt---ccgatatttctctc 245  Q
    | ||||||||||| ||||| || |||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||||   || || ||||||||    
T  12590275 gtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttctttctcccaatgtttctctc 12590176  T
Q  246 ttcgaatccctttggcaaccatttt 270  Q
    ||| |||||  | ||||||||||||    
T  12590175 ttcaaatccactaggcaaccatttt 12590151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 281
Target Start/End: Complemental strand, 12483658 - 12483435
Alignment:
Q  61 tcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 160  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||| || || |||   |||||||| ||||| || |||||||| |    
T  12483658 tcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatg 12483559  T
Q  161 cacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacc---cttcttctttccgatatttctctcttcgaatccctt 257  Q
    ||||||| ||   ||||||||||||||  || ||||| ||||| ||||| || || |||||   ||| ||| |||  || |||||||| || ||||||||    
T  12483558 cacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatcttattccttctaatgtttctctcctcaaatccctt 12483459  T
Q  258 tggcaaccattttcctttctcctc 281  Q
     |||||||| ||| ||||||||||    
T  12483458 cggcaaccacttttctttctcctc 12483435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 46 - 283
Target Start/End: Original strand, 13448336 - 13448570
Alignment:
Q  46 tgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccac 145  Q
    ||||||||||  || |||||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||||||| || || || |||| ||| |    
T  13448336 tgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgc 13448435  T
Q  146 aatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctc 245  Q
    |||||||||||||  | ||||| ||   ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||   ||||||||||||||    
T  13448436 aatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctc 13448532  T
Q  246 ttcgaatccctttggcaaccattttcctttctcctctt 283  Q
    ||| |||||||| || ||||| ||| ||||||| ||||    
T  13448533 ttcaaatcccttcggtaaccacttttctttctcttctt 13448570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 278
Target Start/End: Original strand, 13440191 - 13440402
Alignment:
Q  64 ttgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcac 163  Q
    ||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||| ||| ||| | || |||| ||| ||||||||||||||  | |    
T  13440191 ttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataaatcccc 13440290  T
Q  164 ccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaa 263  Q
    |||| ||   ||||||||| ||| |||||||||| ||||||||| |||| ||||||||| || ||   |  || ||||||||||||||||||||||||||    
T  13440291 ccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctc---ctaatgtttctctcttcgaatccctttggcaa 13440387  T
Q  264 ccattttcctttctc 278  Q
    ||| ||| |||||||    
T  13440388 ccacttttctttctc 13440402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 283
Target Start/End: Original strand, 13454792 - 13455041
Alignment:
Q  31 ccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacag 130  Q
    ||||||| ||| || |||||||| |  || || ||||| ||||| ||||| || || |||||||| ||||| ||||| ||    ||||||||||| ||      
T  13454792 ccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacga 13454891  T
Q  131 tggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctt 230  Q
    | || |||| ||| ||||||||||||||  | ||||| ||   ||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||     
T  13454892 ttgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct- 13454990  T
Q  231 tccgatatttctctcttcgaatccctttggcaaccattttcctttctcctctt 283  Q
      |||| ||| ||||||| |||||||| |||||||| |||  |||||||||||    
T  13454991 --cgatgtttttctcttcaaatcccttcggcaaccacttttgtttctcctctt 13455041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 3417753 - 3417499
Alignment:
Q  26 ccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctc 125  Q
    |||| ||||||| ||| || |||||||| |  || |||||| | ||||| ||||| ||  |||||||||| ||||| ||||| ||||||| |||||||||    
T  3417753 ccactccaattcctcggacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctc 3417654  T
Q  126 aacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttc 225  Q
    ||||   || |||| ||||||||| ||||||||  | || || ||   ||||||||| |||  ||| ||||| |||||||||||||  ||||||||   |    
T  3417653 aacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacc---c 3417557  T
Q  226 ttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctctt 283  Q
    |||||||| || |||||||| || |||||||| |||||||| ||| ||||||| ||||    
T  3417556 ttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttctt 3417499  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 283
Target Start/End: Original strand, 12540699 - 12540892
Alignment:
Q  87 cggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatc 186  Q
    ||||||||| ||||| ||||| || |||| ||||||||| ||| | || || | ||||||||| ||||||||  | ||||| ||   ||||||||| |||    
T  12540699 cggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatc 12540798  T
Q  187 ataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctctt 283  Q
     |||| ||||| |||||||||||||| ||||||||   ||| ||||| || |||||||| || |||||||| |||| ||| ||| ||||||| ||||    
T  12540799 ttaacctgtggggcccaacccctaatgatcaaacc---cttttttccaatgtttctctcctcaaatcccttcggcatccacttttctttctcttctt 12540892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 28385438 - 28385541
Alignment:
Q  177 gctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttc 276  Q
    |||||| |||| ||||||||| ||||||||||| || || |||||   ||||||||| || |||||||| || ||||||||||||| ||| ||| |||||    
T  28385438 gctcaatatcagaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatccctttggcagccacttttctttc 28385534  T
Q  277 tcctctt 283  Q
    || ||||    
T  28385535 tcttctt 28385541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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