View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16178_low_11 (Length: 274)
Name: NF16178_low_11
Description: NF16178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16178_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 2652984 - 2653090
Alignment:
| Q |
158 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2652984 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
2653083 |
T |
|
| Q |
258 |
gatgatg |
264 |
Q |
| |
|
||||||| |
|
|
| T |
2653084 |
gatgatg |
2653090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 2652843 - 2652953
Alignment:
| Q |
17 |
cacaaacatcacatcaaacaatcgctaagaacattaaatattaacaaagtcactaattaattccttcaaaatagaactacaaaggaacgattaaacataa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
2652843 |
cacaaacatcacatcaaacaatcgctaagaacattaaatattaacaaagtcactaattaattccttcaaagtagaactacaaaggaacaattaaacataa |
2652942 |
T |
|
| Q |
117 |
aatttgttcat |
127 |
Q |
| |
|
||||||||||| |
|
|
| T |
2652943 |
aatttgttcat |
2652953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University