View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16178_low_12 (Length: 238)
Name: NF16178_low_12
Description: NF16178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16178_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 27065598 - 27065395
Alignment:
| Q |
19 |
gataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctat |
118 |
Q |
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| T |
27065598 |
gataaatggtggaaaagttactgaatctgtatcgtgtcaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctat |
27065499 |
T |
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| Q |
119 |
gaagcggatctattggatccagtttctaaggcaaagattaatcatggtgttgctatttgccacttagatacaactgcttggagctcaacccatggtgcat |
218 |
Q |
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| T |
27065498 |
gaagcggatctattggatccagtttctaaggcaaagattaatcatggtgttgctatttgccacttagatacaactgcttggagctccacccatggtgcat |
27065399 |
T |
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| Q |
219 |
tcat |
222 |
Q |
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|||| |
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| T |
27065398 |
tcat |
27065395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 27079311 - 27079112
Alignment:
| Q |
23 |
aatggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtctatgaag |
122 |
Q |
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| T |
27079311 |
aatgggggtaaagttactgaatctgtgtcatgtcaccaaagtttgtttccttatttgctatactattgccactcggttccaaaggttcgtgtttatgaag |
27079212 |
T |
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| Q |
123 |
cggatctattggatccagtttctaaggcaaagattaatcatggtgttgctatttgccacttagatacaactgcttggagctcaacccatggtgcattcat |
222 |
Q |
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| T |
27079211 |
cagatcttttagatcctgagtctaaggtgaagataaatcatggtgttgctatttgtcacttagatacaactgcttggagcccaacacacggtgcattcat |
27079112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 27053157 - 27052953
Alignment:
| Q |
18 |
agataaatggtggaaaagttactgaatctgtgtcgtgccaccagagtttgtttccttatttgttatactactgtcactcggttccaaatgttcatgtcta |
117 |
Q |
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||||||||||||| || |||| || || ||||| || || || |||||||||||||| ||| |||| |||||||| ||||| |||||| ||| | || |
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| T |
27053157 |
agataaatggtgggaacgttatggagtcagtgtcttgtcatcaaagtttgtttccttacttgctatattactgtcattcggtgccaaatattcgaattta |
27053058 |
T |
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| Q |
118 |
tgaagcggatctattggatccagtttctaaggcaaagattaatcatggtgttgctatttgccacttagatacaactgcttggagctcaacccatggtgca |
217 |
Q |
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||||||| |||| ||||| || ||||||| ||||| |||||||||||||| || || ||||| ||||||||||||||||| | || ||||||||| |
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| T |
27053057 |
tgaagcgaatcttttggaccctaagtctaaggtgaagataaatcatggtgttgcgatctgtcacttggatacaactgcttggagtcccactcatggtgca |
27052958 |
T |
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| Q |
218 |
ttcat |
222 |
Q |
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||||| |
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| T |
27052957 |
ttcat |
27052953 |
T |
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